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Source database (GenBank or RefSeq) File type

ASM284808v1

Organism name:: Streptococcus anginosus (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: UMB0142
BioSample:: SAMN08193725
BioProject:: PRJNA316969
Submitter:: Loyola University Chicago
Date:: 2017/12/28
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_002848085.1 (latest)
RefSeq assembly accession:: GCF_002848085.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: PKIH01
Assembly method:: Velvet v. 1.2
Expected final version:: yes
Genome coverage:: 153.46x
Sequencing technology:: Illumina HiSeq

IDs: 1498331 [UID] 5815828 [GenBank] 5857998 [RefSeq]

See Genome Information for Streptococcus anginosus

Pathogen Detection Resources

There are 347 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002848085.1	=	GCF_002848085.1	ASM284808v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Bacteria available from Alan J Wolfe.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::12/22/2017 13:01:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,998
CDS (total)::1,942
Genes (coding)::1,775
CDS (coding)::1,775
Genes (RNA)::56
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::167
Pseudo Genes (ambiguous residues)::1 of 167
Pseudo Genes (frameshifted)::96 of 167
Pseudo Genes (incomplete)::58 of 167
Pseudo Genes (internal stop)::60 of 167
Pseudo Genes (multiple problems)::41 of 167
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,960,871
Total ungapped length	1,955,112
Gaps between scaffolds	0
Number of scaffolds	59
Scaffold N50	118,737
Scaffold L50	3
Number of contigs	73
Contig N50	101,006
Contig L50	5
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	59

	ANI	Query coverage	Subject coverage
Declared type	95.45	78.44	81.73
Best-match type	95.45	78.44	81.73

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ASM284808v1

See Genome Information for Streptococcus anginosus

Pathogen Detection Resources

There are 347 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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