U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM284790v1

Organism name:
Lactobacillus delbrueckii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB0003
BioSample:
SAMN08193694
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2017/12/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002847905.1 (latest)
RefSeq assembly accession:
GCF_002847905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PKKE01
Assembly method:
Velvet v. 1.2
Expected final version:
yes
Genome coverage:
168.76x
Sequencing technology:
Illumina HiSeq

IDs: 1498241 [UID] 5815648 [GenBank] 5860558 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

Pathogen Detection Resources

There are 572 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from Alan J Wolfe.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/22/2017 14:58:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,137
CDS (total)::2,050
Genes (coding)::1,875
CDS (coding)::1,875
Genes (RNA)::87
rRNAs::8, 1, 3 (5S, 16S, 23S)
complete rRNAs::8, 1 (5S, 16S)
partial rRNAs::3 (23S)
tRNAs::72
ncRNAs::3
Pseudo Genes (total)::175
Pseudo Genes (ambiguous residues)::0 of 175
Pseudo Genes (frameshifted)::74 of 175
Pseudo Genes (incomplete)::85 of 175
Pseudo Genes (internal stop)::42 of 175
Pseudo Genes (multiple problems)::24 of 175
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,049,233
Total ungapped length2,041,781
Gaps between scaffolds0
Number of scaffolds79
Scaffold N5050,184
Scaffold L5012
Number of contigs106
Contig N5041,876
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)79

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,049,233792,041,78150,184270

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckiiLactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002278095.1Lactobacillus delbrueckii subsp. lactis DSM 20072type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002278095.1Lactobacillus delbrueckiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7583.8179.00
Best-match type98.7583.8179.00

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna