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ASM284755v1

Organism name:
Actinomyces oris (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB0183
BioSample:
SAMN08193633
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2017/12/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002847555.1 (latest)
RefSeq assembly accession:
GCF_002847555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PKKL01
Assembly method:
Velvet v. 1.2
Expected final version:
yes
Genome coverage:
83.36x
Sequencing technology:
Illumina HiSeq

IDs: 1498071 [UID] 5815308 [GenBank] 5853638 [RefSeq]

See Genome Information for Actinomyces oris

There are 81 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/22/2017 17:00:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,525
CDS (total)::2,468
Genes (coding)::2,434
CDS (coding)::2,434
Genes (RNA)::57
rRNAs::2, 2, 3 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 2 (16S, 23S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::34
Pseudo Genes (ambiguous residues)::1 of 34
Pseudo Genes (frameshifted)::6 of 34
Pseudo Genes (incomplete)::26 of 34
Pseudo Genes (internal stop)::5 of 34
Pseudo Genes (multiple problems)::3 of 34
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,015,022
Total ungapped length3,010,077
Gaps between scaffolds0
Number of scaffolds15
Scaffold N50450,256
Scaffold L503
Number of contigs32
Contig N50228,681
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)15

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,015,022153,010,077450,256170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinomyces orisActinomyces oris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016127955.1Actinomyces orissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016127955.1Actinomyces orissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.5391.1886.03
Best-match type96.5391.1886.03

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna