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ASM279604v1

Organism name:
Candidatus Roizmanbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_36_8 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
CG11_big_fil_rev_8_21_14_0_20_36_8
BioSample:
SAMN06659507
BioProject:
PRJNA362739
Submitter:
DOE Joint Genome Institute
Date:
2017/11/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002796045.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PCVM01
Assembly method:
IDBA-UD v. 02.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1451641 [UID] 5681658 [GenBank]

See Genome Information for Candidatus Roizmanbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_36_8

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/05/2017 17:33:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::963
CDS (total)::935
Genes (coding)::891
CDS (coding)::891
Genes (RNA)::28
tRNAs::27
ncRNAs::1
Pseudo Genes (total)::44
Pseudo Genes (ambiguous residues)::31 of 44
Pseudo Genes (frameshifted)::4 of 44
Pseudo Genes (incomplete)::7 of 44
Pseudo Genes (internal stop)::3 of 44
Pseudo Genes (multiple problems)::1 of 44
##Genome-Annotation-Data-END##

Global statistics

Total sequence length851,598
Total ungapped length842,097
Gaps between scaffolds0
Number of scaffolds113
Scaffold N507,953
Scaffold L5040
Number of contigs233
Contig N505,631
Contig L5053
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)113

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced851,598113842,0977,9531200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Roizmanbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_36_8Candidatus Roizmanbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_36_8

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana