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ASM278109v1

Organism name:
Candidatus Roizmanbacteria bacterium CG01_land_8_20_14_3_00_33_9 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
CG01_land_8_20_14_3_00_33_9
BioSample:
SAMN06659161
BioProject:
PRJNA362739
Submitter:
None
Date:
2017/11/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002781095.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PETM01
Assembly method:
IDBA-UD v. 02.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1444101 [UID] 5661778 [GenBank]

See Genome Information for Candidatus Roizmanbacteria bacterium CG01_land_8_20_14_3_00_33_9

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/07/2017 13:26:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::677
CDS (total)::666
Genes (coding)::643
CDS (coding)::643
Genes (RNA)::11
tRNAs::11
ncRNAs::0
Pseudo Genes (total)::23
Pseudo Genes (ambiguous residues)::15 of 23
Pseudo Genes (frameshifted)::2 of 23
Pseudo Genes (incomplete)::3 of 23
Pseudo Genes (internal stop)::3 of 23
##Genome-Annotation-Data-END##

Global statistics

Total sequence length599,099
Total ungapped length595,018
Gaps between scaffolds0
Number of scaffolds86
Scaffold N507,182
Scaffold L5028
Number of contigs136
Contig N505,483
Contig L5035
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)86

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced599,09986595,0187,182500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Roizmanbacteria bacterium CG01_land_8_20_14_3_00_33_9Candidatus Roizmanbacteria bacterium CG01_land_8_20_14_3_00_33_9

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana