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ASM277092v1

Organism name:
Hydrogenophilales bacterium CG18_big_fil_WC_8_21_14_2_50_58_12 (proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
CG18_big_fil_WC_8_21_14_2_50_58_12
BioSample:
SAMN06659619
BioProject:
PRJNA362739
Submitter:
None
Date:
2017/11/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002770925.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PCUE01
Assembly method:
IDBA-UD v. 02.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1439001 [UID] 5643668 [GenBank]

See Genome Information for Hydrogenophilales bacterium CG18_big_fil_WC_8_21_14_2_50_58_12

Pathogen Detection Resources

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/05/2017 17:34:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,036
CDS (total)::2,992
Genes (coding)::2,783
CDS (coding)::2,783
Genes (RNA)::44
rRNAs::1, 1 (5S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1 (23S)
tRNAs::38
ncRNAs::4
Pseudo Genes (total)::209
Pseudo Genes (ambiguous residues)::61 of 209
Pseudo Genes (frameshifted)::71 of 209
Pseudo Genes (incomplete)::108 of 209
Pseudo Genes (internal stop)::10 of 209
Pseudo Genes (multiple problems)::40 of 209
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,905,160
Total ungapped length2,898,105
Gaps between scaffolds0
Number of scaffolds314
Scaffold N5015,850
Scaffold L5062
Number of contigs484
Contig N5010,370
Contig L5084
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)314

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,905,1603142,898,10515,8501700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Hydrogenophilales bacterium CG18_big_fil_WC_8_21_14_2_50_58_12Hydrogenophilales bacterium CG18_big_fil_WC_8_21_14_2_50_58_12

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000297055.2Sulfuricella denitrificanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.4851.0045.96

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna