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ASM274997v1

Organism name:
Gloeocapsopsis sp. IPPAS B-1203 (cyanobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: IPPAS:B-1203
Infraspecific name:
Strain: IPPAS B-1203
BioSample:
SAMN07816539
BioProject:
PRJNA415142
Submitter:
Institute of Plant Physiology, Russian Academy of Sciences
Date:
2017/11/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002749975.1 (latest)
RefSeq assembly accession:
GCF_002749975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PEIG01
Assembly method:
SPAdes v. 3.11.1
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
IonTorrent; Solexa

IDs: 1428371 [UID] 5610478 [GenBank] 5628218 [RefSeq]

See Genome Information for Gloeocapsopsis sp. IPPAS B-1203

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from IPPAS.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/30/2017 11:26:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,374
CDS (total)::5,328
Genes (coding)::5,072
CDS (coding)::5,072
Genes (RNA)::46
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::39
ncRNAs::4
Pseudo Genes (total)::256
Pseudo Genes (ambiguous residues)::0 of 256
Pseudo Genes (frameshifted)::120 of 256
Pseudo Genes (incomplete)::109 of 256
Pseudo Genes (internal stop)::86 of 256
Pseudo Genes (multiple problems)::51 of 256
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,914,154
Total ungapped length5,914,154
Number of contigs57
Contig N50398,834
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)57

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,914,154575,914,154398,83400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gloeocapsopsis sp. IPPAS B-1203Gloeocapsopsis sp. IPPAS B-1203

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_015207655.1Gloeocapsopsis crepidinumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.0780.2083.67

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna