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SGP5_Cgig_v1.3

Organism name:
Carnegiea gigantea (saguaro)
Infraspecific name:
Ecotype: Tumamoc Hill #2
Isolate:
SGP5
BioSample:
SAMN04868325
BioProject:
PRJNA318822
Submitter:
The University of Arizona
Date:
2017/10/31
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002740515.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
NCQR01
Assembly method:
Meraculous v. 1.2
Expected final version:
no
Genome coverage:
98x
Sequencing technology:
Illumina

IDs: 1423511 [UID] 5599808 [GenBank]

See Genome Information for Carnegiea gigantea

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length980,350,675
Total ungapped length961,402,897
Gaps between scaffolds0
Number of scaffolds57,405
Scaffold N5061,549
Scaffold L504,574
Number of contigs114,810
Contig N5018,485
Contig L5013,955
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)57,405

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced980,350,67557,405961,402,89761,54957,4050