U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM250016v1

Organism name:
Gordonia sp. UBA7860 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Isolate:
UBA7860
BioSample:
SAMN06454598
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/10/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_002500165.1 (latest)
RefSeq assembly accession:
GCF_002500165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
DLSO01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
14.18x
Sequencing technology:
Illumina

IDs: 1301311 [UID] 5264568 [GenBank] 43917988 [RefSeq]

See Genome Information for Gordonia sp. UBA7860

History (Show revision history)

Comment

Global statistics

Total sequence length5,164,548
Total ungapped length5,147,013
Gaps between scaffolds0
Number of scaffolds206
Scaffold N5041,341
Scaffold L5044
Number of contigs302
Contig N5037,731
Contig L5049
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)206

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,164,5482065,147,01341,341960

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gordonia sp. UBA7860Gordonia sp. UBA7860

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000248055.2Gordonia sputitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.5182.5685.79

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna