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ASM239030v1

Organism name:
Micrococcales bacterium UBA4448 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA4448
BioSample:
SAMN06454677
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/09/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002390305.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DGPE01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
11.06x
Sequencing technology:
Illumina

IDs: 1243651 [UID] 5127488 [GenBank]

See Genome Information for Micrococcales bacterium UBA4448

History (Show revision history)

Comment

Global statistics

Total sequence length1,187,639
Total ungapped length1,185,684
Gaps between scaffolds0
Number of scaffolds93
Scaffold N5017,577
Scaffold L5019
Number of contigs121
Contig N5013,732
Contig L5023
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)93

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,187,639931,185,68417,577280

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Micrococcales bacterium UBA4448Micrococcales bacterium UBA4448

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002355535.1Aurantimicrobium minutumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.340.060.04

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena