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ASM236338v1

Organism name:
Stenotrophomonas maltophilia (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA3237
BioSample:
SAMN06457142
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/09/26
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_002363385.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DEVL01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
34.84x
Sequencing technology:
Illumina

IDs: 1230101 [UID] 5096388 [GenBank]

See Genome Information for Stenotrophomonas maltophilia

There are 1940 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,949,489
Total ungapped length3,946,582
Gaps between scaffolds0
Number of scaffolds6
Scaffold N50538,133
Scaffold L502
Number of contigs23
Contig N50355,144
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)6

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,949,48963,946,582538,133170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Stenotrophomonas maltophiliaStenotrophomonas maltophilia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001997185.1Stenotrophomonas maltophiliatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000661955.1Stenotrophomonas rhizophilasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type84.1150.6440.36
Best-match type87.0573.1562.14

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna