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ASM229184v1

Organism name:
Alphaproteobacteria bacterium UBA1002 (a-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA1002
BioSample:
SAMN06455466
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/09/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002291845.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DBAU01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
13.43x
Sequencing technology:
Illumina

IDs: 1192381 [UID] 4998848 [GenBank]

See Genome Information for Alphaproteobacteria bacterium UBA1002

History (Show revision history)

Comment

Global statistics

Total sequence length1,887,187
Total ungapped length1,879,645
Gaps between scaffolds0
Number of scaffolds110
Scaffold N5025,872
Scaffold L5021
Number of contigs133
Contig N5025,872
Contig L5023
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)110

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,887,1871101,879,64525,872230

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Alphaproteobacteria bacterium UBA1002Alphaproteobacteria bacterium UBA1002

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_018863195.1Sphingomonas quercustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.290.020.01

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena