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ASM216175v1

Organism name:
Flavonifractor sp. An4 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: An4
BioSample:
SAMN06473722
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2017/05/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002161755.1 (latest)
RefSeq assembly accession:
GCF_002161755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NFIL01
Assembly method:
IDBA_UD v. 1.1.1
Expected final version:
yes
Genome coverage:
373x
Sequencing technology:
Illumina NextSeq 500

IDs: 1115201 [UID] 4537448 [GenBank] 4543448 [RefSeq]

See Genome Information for Flavonifractor sp. An4

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/08/2017 18:07:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,212
CDS (total)::3,130
Genes (coding)::3,050
CDS (coding)::3,050
Genes (RNA)::82
rRNAs::3, 2, 3 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 23S)
partial rRNAs::2, 2 (16S, 23S)
tRNAs::69
ncRNAs::5
Pseudo Genes (total)::80
Pseudo Genes (ambiguous residues)::0 of 80
Pseudo Genes (frameshifted)::21 of 80
Pseudo Genes (incomplete)::52 of 80
Pseudo Genes (internal stop)::12 of 80
Pseudo Genes (multiple problems)::5 of 80
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,212,734
Total ungapped length3,212,734
Number of contigs128
Contig N5069,273
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)128

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,212,7341283,212,73469,27300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Flavonifractor sp. An4Flavonifractor sp. An4

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000169255.2Pseudoflavonifractor capillosussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.6019.9115.09

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna