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ASM216131v1

Organism name:
Faecalibacterium sp. An77 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: An77
BioSample:
SAMN06473756
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2017/05/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002161315.1 (latest)
RefSeq assembly accession:
GCF_002161315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NFHK01
Assembly method:
IDBA_UD v. 1.1.1
Expected final version:
yes
Genome coverage:
265x
Sequencing technology:
Illumina NextSeq 500

IDs: 1114981 [UID] 4537008 [GenBank] 4542648 [RefSeq]

See Genome Information for Faecalibacterium sp. An77

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/08/2017 17:29:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,865
CDS (total)::2,782
Genes (coding)::2,724
CDS (coding)::2,724
Genes (RNA)::83
rRNAs::7, 5, 6 (5S, 16S, 23S)
complete rRNAs::6 (5S)
partial rRNAs::1, 5, 6 (5S, 16S, 23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::58
Pseudo Genes (ambiguous residues)::0 of 58
Pseudo Genes (frameshifted)::17 of 58
Pseudo Genes (incomplete)::31 of 58
Pseudo Genes (internal stop)::13 of 58
Pseudo Genes (multiple problems)::3 of 58
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,051,386
Total ungapped length3,051,386
Number of contigs124
Contig N5059,701
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)124

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,051,3861243,051,38659,70100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Faecalibacterium sp. An77Faecalibacterium sp. An77

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022180365.1Faecalibacterium gallinarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.6933.2736.09

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna