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ASM215970v1

Organism name:
Elusimicrobium sp. An273 (bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: An273
BioSample:
SAMN06473703
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2017/05/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002159705.1 (latest)
RefSeq assembly accession:
GCF_002159705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NFJD01
Assembly method:
IDBA_UD v. 1.1.1
Expected final version:
yes
Genome coverage:
210x
Sequencing technology:
Illumina NextSeq 500

IDs: 1114151 [UID] 4535378 [GenBank] 4542988 [RefSeq]

See Genome Information for Elusimicrobium sp. An273

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/08/2017 18:16:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,453
CDS (total)::1,401
Genes (coding)::1,396
CDS (coding)::1,396
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::2
Pseudo Genes (total)::5
Pseudo Genes (ambiguous residues)::0 of 5
Pseudo Genes (frameshifted)::1 of 5
Pseudo Genes (incomplete)::2 of 5
Pseudo Genes (internal stop)::2 of 5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,501,445
Total ungapped length1,501,445
Number of contigs14
Contig N50328,396
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)14

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,501,445141,501,445328,39600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Elusimicrobium sp. An273Elusimicrobium sp. An273

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000020145.1Elusimicrobium minutumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.930.420.38

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena