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ASM215957v1

Organism name:
Megamonas hypermegale (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: An288
BioSample:
SAMN06473710
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2017/05/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002159575.1 (latest)
RefSeq assembly accession:
GCF_002159575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NFIW01
Assembly method:
IDBA_UD v. 1.1.1
Expected final version:
yes
Genome coverage:
227x
Sequencing technology:
Illumina NextSeq 500

IDs: 1114101 [UID] 4535248 [GenBank] 4544028 [RefSeq]

See Genome Information for Megamonas hypermegale

There are 23 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/08/2017 18:13:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,079
CDS (total)::2,011
Genes (coding)::1,984
CDS (coding)::1,984
Genes (RNA)::68
rRNAs::5, 1, 5 (5S, 16S, 23S)
complete rRNAs::4, 1 (5S, 16S)
partial rRNAs::1, 5 (5S, 23S)
tRNAs::53
ncRNAs::4
Pseudo Genes (total)::27
Pseudo Genes (ambiguous residues)::0 of 27
Pseudo Genes (frameshifted)::7 of 27
Pseudo Genes (incomplete)::17 of 27
Pseudo Genes (internal stop)::5 of 27
Pseudo Genes (multiple problems)::2 of 27
CRISPR Arrays::10
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,143,661
Total ungapped length2,143,661
Number of contigs54
Contig N50103,086
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,143,661542,143,661103,08600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Megamonas hypermegaleMegamonas hypermegale

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900187035.1Megamonas hypermegalesuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900187035.1Megamonas hypermegalesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1490.3786.86
Best-match type98.1490.3786.86

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna