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ASM215941v1

Organism name:
Odoribacter splanchnicus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: An39
BioSample:
SAMN06473721
BioProject:
PRJNA377666
Submitter:
Veterinary Research Institute
Date:
2017/05/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002159415.1 (latest)
RefSeq assembly accession:
GCF_002159415.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NFIM01
Assembly method:
IDBA_UD v. 1.1.1
Expected final version:
yes
Genome coverage:
200x
Sequencing technology:
Illumina NextSeq 500

IDs: 1114021 [UID] 4535098 [GenBank] 4543968 [RefSeq]

See Genome Information for Odoribacter splanchnicus

There are 150 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/08/2017 18:09:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,013
CDS (total)::3,942
Genes (coding)::3,859
CDS (coding)::3,859
Genes (RNA)::71
rRNAs::4, 2, 4 (5S, 16S, 23S)
complete rRNAs::4, 1 (5S, 16S)
partial rRNAs::1, 4 (16S, 23S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::83
Pseudo Genes (ambiguous residues)::0 of 83
Pseudo Genes (frameshifted)::40 of 83
Pseudo Genes (incomplete)::47 of 83
Pseudo Genes (internal stop)::15 of 83
Pseudo Genes (multiple problems)::18 of 83
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,696,790
Total ungapped length4,696,790
Number of contigs76
Contig N50142,893
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)76

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,696,790764,696,790142,89300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Odoribacter splanchnicusOdoribacter splanchnicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000190535.1Odoribacter splanchnicus DSM 20712suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000190535.1Odoribacter splanchnicussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9572.4377.45
Best-match type98.9572.4377.45

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna