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ASM194146v1

Organism name:
Corynebacterium flavescens (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:20296
Infraspecific name:
Strain: OJ8
BioSample:
SAMN02996497
BioProject:
PRJNA242338
Submitter:
Bielefeld University
Date:
2017/01/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001941465.1 (latest)
RefSeq assembly accession:
GCF_001941465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.8
Sequencing technology:
Illumina

IDs: 946421 [UID] 3959438 [GenBank] 3970748 [RefSeq]

See Genome Information for Corynebacterium flavescens

There are 19 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/16/2023 10:34:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,541
CDSs (total)::2,471
Genes (coding)::2,427
CDSs (with protein)::2,427
Genes (RNA)::70
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::52
ncRNAs::3
Pseudo Genes (total)::44
CDSs (without protein)::44
Pseudo Genes (ambiguous residues)::0 of 44
Pseudo Genes (frameshifted)::18 of 44
Pseudo Genes (incomplete)::22 of 44
Pseudo Genes (internal stop)::10 of 44
Pseudo Genes (multiple problems)::6 of 44
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,758,653
Total ungapped length2,758,653
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001941475.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP009246.1=NZ_CP009246.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,758,653

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium flavescensCorynebacterium flavescens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_008693105.1Corynebacterium flavescenstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008693105.1Corynebacterium flavescenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9996.7699.00
Best-match type99.9996.7699.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna