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ASM191956v1

Organism name:
Gemmatimonadetes bacterium 13_1_20CM_69_28 (bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04327667
BioProject:
PRJNA297196
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/12/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001919565.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MNIC01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 933751 [UID] 3919798 [GenBank]

See Genome Information for Gemmatimonadetes bacterium 13_1_20CM_69_28

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/25/2016 21:25:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,183
CDS (total)::2,156
Genes (coding)::2,004
CDS (coding)::2,004
Genes (RNA)::27
rRNAs::
complete rRNAs::
partial rRNAs::
tRNAs::27
ncRNAs::0
Pseudo Genes (total)::152
Pseudo Genes (ambiguous residues)::5 of 152
Pseudo Genes (frameshifted)::11 of 152
Pseudo Genes (incomplete)::136 of 152
Pseudo Genes (internal stop)::1 of 152
Pseudo Genes (multiple problems)::1 of 152
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,342,840
Total ungapped length2,340,936
Gaps between scaffolds0
Number of scaffolds154
Scaffold N5016,204
Scaffold L5048
Number of contigs172
Contig N5015,617
Contig L5049
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)154

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,342,8401542,340,93616,204180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gemmatimonadetes bacterium 13_1_20CM_69_28Gemmatimonadetes bacterium 13_1_20CM_69_28

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030159095.1Roseisolibacter agritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type78.160.570.23

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena