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ASM187394v1

Organism name:
Candidatus Desantisbacteria bacterium CG2_30_40_21 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
CG2_30_40_21
BioSample:
SAMN04328251
BioProject:
PRJNA297582
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/11/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001873945.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MNYI01
Assembly method:
IDBA-UD v. 12.2012
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 887071 [UID] 3718358 [GenBank]

See Genome Information for Candidatus Desantisbacteria bacterium CG2_30_40_21

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/31/2016 14:46:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,930
CDS (total)::1,892
Genes (coding)::1,805
CDS (coding)::1,805
Genes (RNA)::38
rRNAs::1, 1 (5S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1 (23S)
tRNAs::34
ncRNAs::2
Pseudo Genes (total)::87
Pseudo Genes (ambiguous residues)::2 of 87
Pseudo Genes (frameshifted)::10 of 87
Pseudo Genes (incomplete)::69 of 87
Pseudo Genes (internal stop)::6 of 87
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,148,420
Total ungapped length2,148,228
Gaps between scaffolds0
Number of scaffolds249
Scaffold N5010,552
Scaffold L5066
Number of contigs256
Contig N5010,549
Contig L5067
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)249

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,148,4202492,148,22810,55270

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Desantisbacteria bacterium CG2_30_40_21Candidatus Desantisbacteria bacterium CG2_30_40_21

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900176305.1Clostridium acidisolitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.720.020.01

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena