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T_cupido_pinnatus_GPC_3440_v1

Organism name:
Tympanuchus cupido pinnatus (greater prairie chicken)
Isolate:
GPC 3440
Sex:
female
BioSample:
SAMN05433571
BioProject:
PRJNA330991
Submitter:
Revive & Restore Heath Hen De-extinction Team
Date:
2016/11/07
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001870855.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MOXI01
Assembly method:
Chicago HiRise v. FEB-2015; Meraculous v. FEB-2015
Expected final version:
yes
Genome coverage:
95.0x
Sequencing technology:
Illumina HiSeq

IDs: 885521 [UID] 3710798 [GenBank]

See Genome Information for Tympanuchus cupido

History (Show revision history)

Comment

Global statistics

Total sequence length983,776,544
Total ungapped length979,919,245
Gaps between scaffolds0
Number of scaffolds12,186
Scaffold N5012,138,678
Scaffold L5023
Number of contigs60,594
Contig N5047,484
Contig L505,869
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)12,186

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced983,776,54412,186979,919,24512,138,67848,4080