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ASM165797v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: E75
BioSample:
SAMN04622672
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2016/06/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001657975.1 (latest)
RefSeq assembly accession:
GCF_001657975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LXGO01
Assembly method:
Velvet v. 1.20.09
Expected final version:
yes
Genome coverage:
118.0x
Sequencing technology:
Illumina MiSeq

IDs: 753381 [UID] 3287178 [GenBank] 3291788 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 266030 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length5,032,328
Total ungapped length4,974,755
Gaps between scaffolds0
Number of scaffolds463
Scaffold N5018,709
Scaffold L5082
Number of contigs536
Contig N5016,702
Contig L5092
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)463

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,032,3284634,974,75518,709730

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000013265.1Escherichia coli UTI89claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000013265.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1093.5389.82
Best-match type99.1093.5389.82

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna