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ASM154262v2

Organism name:
Streptomyces griseochromogenes (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: ATCC:14511
Infraspecific name:
Strain: ATCC 14511
BioSample:
SAMN04375936
BioProject:
PRJNA307132
Submitter:
China National Rice Research Institute
Date:
2016/07/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001542625.2 (latest)
RefSeq assembly accession:
GCF_001542625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. unspecified
Genome coverage:
101x
Sequencing technology:
PacBio

IDs: 765321 [UID] 3331088 [GenBank] 3398568 [RefSeq]

See Genome Information for Streptomyces griseochromogenes

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 13:38:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::9,786
CDSs (total)::9,683
Genes (coding)::9,277
CDSs (with protein)::9,277
Genes (RNA)::103
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::82
ncRNAs::3
Pseudo Genes (total)::413
CDSs (without protein)::406
Pseudo Genes (ambiguous residues)::0 of 413
Pseudo Genes (frameshifted)::154 of 413
Pseudo Genes (incomplete)::337 of 413
Pseudo Genes (internal stop)::42 of 413
Pseudo Genes (multiple problems)::115 of 413
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,764,674
Total ungapped length10,764,674
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001542635.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP016279.1=NZ_CP016279.1

Assembly statistics

MoleculeTotal
Length
Chromosome 10,764,674

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces griseochromogenesStreptomyces griseochromogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017874495.1Streptomyces griseochromogenestype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017874495.1Streptomyces griseochromogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.9099.96
Best-match type99.9998.9099.96

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna