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ASM151260v1

Organism name:
Clostridia bacterium DTU014 (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
DTU014
BioSample:
SAMN03777429
BioProject:
PRJNA283298
Submitter:
Technical University of Denmark
Date:
2016/01/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001512605.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LFSU01
Assembly method:
CLC NGS Cell v. OCT-2014
Expected final version:
yes
Genome coverage:
Not Applicable
Sequencing technology:
Illumina HiSeq

IDs: 617871 [UID] 2786078 [GenBank]

See Genome Information for Clostridia bacterium DTU014

History (Show revision history)

Comment

Global statistics

Total sequence length2,266,387
Total ungapped length2,251,718
Gaps between scaffolds0
Number of scaffolds93
Scaffold N5062,696
Scaffold L509
Number of contigs259
Contig N5029,835
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)93

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,266,387932,251,71862,6961660

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridia bacterium DTU014Clostridia bacterium DTU014

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006539925.1Glutamicibacter uratoxydanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.290.100.06

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena