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ASM96277v1

Organism name:
Borreliella afzelii K78 (spirochetes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: K78
BioSample:
SAMN03024677
BioProject:
PRJNA158661
Submitter:
BOVAC
Date:
2015/03/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • genome length too large
GenBank assembly accession:
GCA_000962775.1 (latest)
RefSeq assembly accession:
GCF_000962775.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Staden Package v. 2002.0; Consed v. 14.00 (04827); phrap v. 0.990319; phred v. 0.020425c; Newbler v. 2.6; Mira v. 3.4.1.1; PerM v. 0.3.9; Velvet v. 1.1.04; HAPS v. 0.2.0; LifeScope v. 2.5; MUMer v. 3.22
Reference guided assembly:
NC_001318.1
Genome coverage:
7.6x (linear chromosome); 2800x (plasmids)
Sequencing technology:
Sanger; 454; SOLiD4 mate-pair

IDs: 316701 [UID] 1707888 [GenBank] 1893948 [RefSeq]

See Genome Information for Borreliella afzelii

There are 46 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,309,078
Total ungapped length1,309,078
Total number of chromosomes and plasmids14

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000962785.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP009058.1=NZ_CP009058.1
Plasmid lp17CP009061.1=NZ_CP009061.1
Plasmid cp26CP009060.1=NZ_CP009060.1
Plasmid lp28-1CP009062.1=NZ_CP009062.1
Plasmid lp28-2CP009063.1=NZ_CP009063.1
Plasmid lp28-3CP009064.1=NZ_CP009064.1
Plasmid lp28-4CP009065.1=NZ_CP009065.1
Plasmid lp28-8CP009066.1=NZ_CP009066.1
Plasmid cp32-3CP009070.1=NZ_CP009070.1
Plasmid cp32-4CP009069.1=NZ_CP009069.1
Plasmid cp32-5CP009071.1=NZ_CP009071.1
Plasmid cp32-9CP009068.1=NZ_CP009068.1
Plasmid lp38CP009067.1=NZ_CP009067.1
Plasmid lp54CP009059.1=NZ_CP009059.1

Assembly statistics

MoleculeTotal
Length
All1,309,078
Chromosome 905,949
Plasmid lp1725,221
Plasmid cp2626,571
Plasmid lp28-128,272
Plasmid lp28-228,738
Plasmid lp28-324,282
Plasmid lp28-425,184
Plasmid lp28-828,638
Plasmid cp32-330,797
Plasmid cp32-430,468
Plasmid cp32-530,397
Plasmid cp32-931,266
Plasmid lp3836,114
Plasmid lp5457,181

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Borreliella afzelii K78Borreliella afzelii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014201705.1Borreliella spielmaniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.0185.0095.51

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna