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common carp genome

Organism name:
Cyprinus carpio (common carp)
BioSample:
SAMEA2757102
BioProject:
PRJEB7241
Submitter:
CHINESE ACADEMY OF FISHERY SCIENCE
Date:
2014/11/03
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000951615.2 (latest)
RefSeq assembly accession:
GCF_000951615.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version

IDs: 872241 [UID] 3675138 [GenBank] 3682168 [RefSeq]

See Genome Information for Cyprinus carpio

Pathogen Detection Resources

There are 9 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,713,641,436
Total ungapped length1,670,381,775
Gaps between scaffolds0
Number of scaffolds9,377
Scaffold N507,828,959
Scaffold L5048
Number of contigs53,087
Contig N5075,080
Contig L506,621
Total number of chromosomes and plasmids50
Number of component sequences (WGS or clone)9,377

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000951625.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1LN590701.1=NC_031697.10
Chromosome 2LN590712.1=NC_031698.10
Chromosome 3LN590693.1=NC_031699.10
Chromosome 4LN590680.1=NC_031700.10
Chromosome 5LN590709.1=NC_031701.10
Chromosome 6LN590703.1=NC_031702.10
Chromosome 7LN590677.1=NC_031703.10
Chromosome 8LN590691.1=NC_031704.10
Chromosome 9LN590718.1=NC_031705.10
Chromosome 10LN590700.1=NC_031706.10
Chromosome 11LN590705.1=NC_031707.10
Chromosome 12LN590717.1=NC_031708.10
Chromosome 13LN590687.1=NC_031709.10
Chromosome 14LN590704.1=NC_031710.10
Chromosome 15LN590697.1=NC_031711.10
Chromosome 16LN590685.1=NC_031712.10
Chromosome 17LN590698.1=NC_031713.10
Chromosome 18LN590684.1=NC_031714.10
Chromosome 19LN590720.1=NC_031715.10
Chromosome 20LN590713.1=NC_031716.10
Chromosome 21LN590682.1=NC_031717.10
Chromosome 22LN590699.1=NC_031718.10
Chromosome 23LN590695.1=NC_031719.10
Chromosome 24LN590679.1=NC_031720.10
Chromosome 25LN590719.1=NC_031721.10
Chromosome 26LN590710.1=NC_031722.10
Chromosome 27LN590714.1=NC_031723.10
Chromosome 28LN590678.1=NC_031724.10
Chromosome 29LN590689.1=NC_031725.10
Chromosome 30LN590707.1=NC_031726.10
Chromosome 31LN590690.1=NC_031727.10
Chromosome 32LN590696.1=NC_031728.10
Chromosome 33LN590692.1=NC_031729.10
Chromosome 34LN590676.1=NC_031730.10
Chromosome 35LN590686.1=NC_031731.10
Chromosome 36LN590706.1=NC_031732.10
Chromosome 37LN590672.1=NC_031733.10
Chromosome 38LN590683.1=NC_031734.10
Chromosome 39LN590708.1=NC_031735.10
Chromosome 40LN590711.1=NC_031736.10
Chromosome 41LN590716.1=NC_031737.10
Chromosome 42LN590674.1=NC_031738.10
Chromosome 43LN590694.1=NC_031739.10
Chromosome 44LN590675.1=NC_031740.10
Chromosome 45LN590673.1=NC_031741.10
Chromosome 46LN590715.1=NC_031742.10
Chromosome 47LN590681.1=NC_031743.10
Chromosome 48LN590688.1=NC_031744.10
Chromosome 49LN590671.1=NC_031745.10
Chromosome 50LN590702.1=NC_031746.10
unplacedn/an/an/a9,327

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,713,641,4369,3771,670,381,7757,828,95943,7110
Chromosome 115,297,981115,012,85115,297,9813470
Chromosome 218,998,363118,666,18518,998,3634750
Chromosome 320,567,433120,162,13220,567,4335010
Chromosome 411,347,241111,182,25711,347,2412660
Chromosome 520,922,272120,433,35620,922,2725760
Chromosome 619,716,050119,395,76319,716,0504380
Chromosome 714,157,913113,868,62114,157,9133470
Chromosome 819,797,740119,459,08419,797,7405000
Chromosome 924,322,175123,847,90224,322,1755730
Chromosome 1022,665,327122,240,06622,665,3275370
Chromosome 1119,054,100118,668,42519,054,1004700
Chromosome 1212,725,232112,469,94412,725,2322970
Chromosome 1325,164,623124,729,57925,164,6236260
Chromosome 1418,393,167118,015,20318,393,1674590
Chromosome 158,518,34418,316,5918,518,3442150
Chromosome 1620,606,094120,232,34120,606,0945170
Chromosome 1715,849,037115,457,75515,849,0374470
Chromosome 1822,437,665121,994,84522,437,6655260
Chromosome 197,320,47317,182,1317,320,4731800
Chromosome 2016,766,033116,479,05616,766,0333870
Chromosome 2112,985,561112,702,37912,985,5613270
Chromosome 228,395,09118,248,7658,395,0912120
Chromosome 2318,435,467118,090,79318,435,4674220
Chromosome 2412,449,181112,263,12112,449,1813010
Chromosome 258,535,57518,400,8738,535,5751970
Chromosome 2616,349,257116,008,23416,349,2573930
Chromosome 2716,295,563115,924,29416,295,5634350
Chromosome 2822,269,040121,870,53622,269,0405460
Chromosome 2917,515,369117,162,06317,515,3694090
Chromosome 3018,521,859118,213,90818,521,8594140
Chromosome 3124,603,915124,120,11024,603,9156010
Chromosome 3226,100,072125,609,53026,100,0726430
Chromosome 3324,142,229123,738,18524,142,2295360
Chromosome 3418,891,512118,504,06618,891,5125210
Chromosome 3529,126,390128,559,61729,126,3906900
Chromosome 3622,739,634122,253,09622,739,6345940
Chromosome 3711,248,262111,028,19711,248,2622790
Chromosome 3827,918,166127,419,06227,918,1666750
Chromosome 3916,255,708115,999,82116,255,7083850
Chromosome 4023,490,330123,019,24123,490,3305830
Chromosome 4115,851,267115,558,09415,851,2673650
Chromosome 4213,570,270113,308,13213,570,2703630
Chromosome 4314,329,178114,054,00014,329,1783620
Chromosome 4415,901,873115,592,50015,901,8733990
Chromosome 4517,310,619116,968,26217,310,6194140
Chromosome 467,828,95917,674,4097,828,9591840
Chromosome 4716,759,857116,409,55316,759,8574540
Chromosome 4822,470,700122,015,37822,470,7005800
Chromosome 4911,140,812110,913,58411,140,8123280
Chromosome 507,653,41117,556,5577,653,4111920
unplaced839,929,0469,327813,381,328432,76822,2230