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ASM93873v2

Organism name:
Sphingobacterium sp. PM2-P1-29 (CFB group bacteria)
Taxonomy check:
OK
BioSample:
SAMEA2604507
BioProject:
PRJEB6531
Submitter:
UNIVERSITY OF MINNESOTA
Date:
2014/08/14
Assembly type:
na
Release type:
minor
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • missing strain identifier
GenBank assembly accession:
GCA_000938735.2 (latest)
RefSeq assembly accession:
GCF_000938735.2 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
45x

IDs: 732851 [UID] 3215258 [GenBank] 3395758 [RefSeq]

See Genome Information for Sphingobacterium sp. PM2-P1-29

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length5,366,020
Total ungapped length5,364,100
Number of contigs380
Contig N5023,315
Contig L5073
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)188

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,366,0203805,364,10023,3151920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingobacterium sp. PM2-P1-29Sphingobacterium sp. PM2-P1-29

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003054045.1Sphingobacterium faeciumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.9176.0277.02

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna