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DSM-20222

Organism name:
Bifidobacterium magnum DSM 20222 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 20222
BioSample:
SAMN02442024
BioProject:
PRJNA237576
Submitter:
Key Laboratory of Dairy BiotecInner Mongolia Agricultural University
Date:
2014/11/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000771365.1 (latest)
RefSeq assembly accession:
GCF_000771365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JDUG01
Assembly method:
SOAPdenovo v. 2.01
Expected final version:
yes
Genome coverage:
278.3x
Sequencing technology:
Illunima Hiseq

IDs: 219421 [UID] 1368098 [GenBank] 1371928 [RefSeq]

See Genome Information for Bifidobacterium magnum

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,819,235
Total ungapped length1,819,235
Number of contigs49
Contig N5088,763
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,819,235491,819,23588,76300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium magnum DSM 20222Bifidobacterium magnum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000420565.1Bifidobacterium magnum DSM 20222type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000420565.1Bifidobacterium magnumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.8999.56
Best-match type99.9999.8999.56

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna