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ASM62377v2

Organism name:
Salmonella enterica subsp. enterica serovar Enteritidis str. EC20090193 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Serovar: Enteritidis
Infraspecific name:
Strain: EC20090193
BioSample:
SAMN02384180
BioProject:
PRJNA219482
Submitter:
LFZ
Date:
2016/02/05
Assembly type:
na
Release type:
minor
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000623775.2 (latest)
RefSeq assembly accession:
GCF_000623775.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SPAdes v. 3.5.0
Reference guided assembly:
AM933172.1
Genome coverage:
> 70 X
Sequencing technology:
Illumina

IDs: 637871 [UID] 2867638 [GenBank] 2870948 [RefSeq]

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 540888 assemblies for this organism

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History (Show revision history)

Comment

Source DNA/bacteria available from Roger Johnson, MVSc, PhD. Research Scientist and Director of Reference Laboratories, National Microbiology Laboratory at Guelph
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000623775.2-RS_2024_06_16
Annotation Date::06/16/2024 19:14:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,495
CDSs (total)::4,375
Genes (coding)::4,232
CDSs (with protein)::4,232
Genes (RNA)::120
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::83
ncRNAs::15
Pseudo Genes (total)::143
CDSs (without protein)::143
Pseudo Genes (ambiguous residues)::0 of 143
Pseudo Genes (frameshifted)::65 of 143
Pseudo Genes (incomplete)::98 of 143
Pseudo Genes (internal stop)::33 of 143
Pseudo Genes (multiple problems)::45 of 143
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,685,850
Total ungapped length4,646,589
Gaps between scaffolds0
Number of scaffolds1
Scaffold N504,685,850
Scaffold L501
Number of contigs5
Contig N502,018,532
Contig L502
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000623785.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP007321.2=NZ_CP007321.2

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Chromosome 4,685,85014,646,5894,685,85040

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Enteritidis str. EC20090193Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016028495.1Salmonella entericatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016028495.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9896.0089.77
Best-match type98.9896.0089.77

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna