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Capca1

Organism name:
Capitella teleta (segmented worms)
Infraspecific name:
Strain: I ESC-2004
BioSample:
SAMN02769627
BioProject:
PRJNA175705
Submitter:
DOE Joint Genome Institute
Date:
2013/01/25
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000328365.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AMQN01
Assembly method:
JGI Jazz Assembler v. 10/16/2006
Genome coverage:
7.9x
Sequencing technology:
Sanger

IDs: 539988 [UID] 539988 [GenBank]

See Genome Information for Capitella teleta

History (Show revision history)

Comment

URL -- http://genome.jgi.doe.gov/Capca1
JGI Project ID: 16637
The DNA was provided by Daniel Rokshar(dsrokhsar@lbl.gov)
The strain is available from Daniel Rokshar
Contacts: Daniel Rokshar (dsrokhsar@lbl.gov)
Igor Grigoriev (ivgrigoriev@lbl.gov)
Assembly and annotation done by JGI.
The JGI and collaborators endorse the principles for the distribution and use ... of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length333,283,208
Total ungapped length276,663,671
Gaps between scaffolds0
Number of scaffolds20,803
Scaffold N50188,402
Scaffold L50453
Number of contigs49,393
Contig N5021,930
Contig L503,222
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49,393

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced333,283,20820,803276,663,671188,40228,5900