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ASM17705v1

Organism name:
Hoylesella timonensis CRIS 5C-B1 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CRIS 5C-B1
BioSample:
SAMN00003362
BioProject:
PRJNA40667
Submitter:
JCVI
Date:
2009/12/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000177055.1 (latest)
RefSeq assembly accession:
GCF_000177055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADEF01

IDs: 222098 [UID] 222078 [GenBank] 222098 [RefSeq]

See Genome Information for Hoylesella timonensis

There are 27 assemblies for this organism

See more

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project.
This project is co-owned with the Human Microbiome Project DACC.
Genome Coverage: 77x
Sequencing Technology: 454
Product names were updated in June 2013

Global statistics

Total sequence length2,796,067
Total ungapped length2,796,067
Number of contigs72
Contig N50102,109
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)72

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,796,067722,796,067102,10900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Hoylesella timonensis CRIS 5C-B1Hoylesella timonensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000455445.1Hoylesella timonensis 4401737 = DSM 22865 = JCM 15640suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000455445.1Hoylesella timonensissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.6180.7072.16
Best-match type95.6180.7072.16

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna