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TGA4

Organism name:
Toxoplasma gondii ME49 (apicomplexans)
Infraspecific name:
Strain: ME49
BioSample:
SAMN00255192
BioProject:
PRJNA28893
Submitter:
J. Craig Venter Institute
Date:
2013/08/02
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000006565.2 (latest)
RefSeq assembly accession:
GCF_000006565.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 3 unlocalized scaffolds on chromosome Api
  • Only in RefSeq: chromosome Pltd
  • Data displayed for RefSeq version
WGS Project:
ABPA02
Assembly method:
Celera Assembler v. 1.92
Genome coverage:
26.55x
Sequencing technology:
454 GS FLX Titanium; Sanger

IDs: 47471 [UID] 751938 [GenBank] 3557728 [RefSeq]

See Genome Information for Toxoplasma gondii

There are 29 assemblies for this organism

See more

History (Show revision history)

Comment

This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Sequencing Centers for Infectious Diseases (GSCID) program. This sequence record is co-owned by JCVI and EuPathDB. Additional Toxoplasma gondii resources are available at ToxoDB, ... http://toxodb.org/toxo/ and at JCVI, http://gsc.jcvi.org/projects/gsc/t_gondii/index.shtml.

The VEuPathDB Bioinformatics Resource Center (www.veupathdb.org) is responsible for the assembled genome sequence and its annotation as of March 2022. Annotation and related data can be viewed and updated at http://veupathdb.org and inquiries can be sent to help@veupathdb.org.  more

Global statistics

Total sequence length65,668,120
Total ungapped length65,465,043
Gaps between scaffolds13
Number of scaffolds2,277
Scaffold N504,973,582
Scaffold L506
Number of contigs2,508
Contig N501,219,553
Contig L5017
Total number of chromosomes and plasmids15
Number of component sequences (WGS or clone)2,508

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000006575.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome IaCM002034.1=NC_031467.10
Chromosome IbCM002035.1=NC_031468.10
Chromosome IICM002036.1=NC_031469.10
Chromosome IIICM002037.1=NC_031470.10
Chromosome IVCM002038.1=NC_031471.10
Chromosome VCM002039.1=NC_031472.10
Chromosome VICM002040.1=NC_031473.10
Chromosome VIIaCM002041.1=NC_031474.10
Chromosome VIIbCM002042.1=NC_031475.10
Chromosome VIIICM002043.1=NC_031476.10
Chromosome IXCM002044.1=NC_031477.10
Chromosome XCM002045.1=NC_031478.10
Chromosome XICM002046.1=NC_031479.10
Chromosome XIICM002047.1=NC_031480.10
unplacedn/an/an/a2,249

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All65,633,1242,27665,430,0474,973,58223113
Chromosome Ia1,859,93311,858,1431,859,93330
Chromosome Ib1,955,35411,954,6181,955,35440
Chromosome II2,347,03212,342,9202,347,03280
Chromosome III2,532,87112,521,9612,532,871130
Chromosome IV2,686,60532,670,6532,171,130262
Chromosome V3,331,91553,311,855931,177284
Chromosome VI3,646,98323,635,2801,903,716131
Chromosome VIIa4,541,62924,533,7674,508,000191
Chromosome VIIb5,069,72415,044,4025,069,724150
Chromosome VIII6,970,28516,965,7706,970,28560
Chromosome IX6,327,65536,301,4884,973,582282
Chromosome X7,486,19027,470,2397,134,997141
Chromosome XI6,623,46126,611,5975,633,91271
Chromosome XII7,094,42827,074,1096,725,500251
unplaced3,159,0592,2493,133,2451,354220
MoleculeTotal
Length
Apicoplast Pltd34,996