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IMG-taxon 2675903133 annotated assembly

Organism name:
Nocardiopsis flavescens (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 4.5723
BioSample:
SAMN05421803
BioProject:
PRJEB18308
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/12/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900141985.1 (latest)
RefSeq assembly accession:
GCF_900141985.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FQZK01
Genome coverage:
100x

IDs: 908751 [UID] 3775128 [GenBank] 3843328 [RefSeq]

See Genome Information for Nocardiopsis flavescens

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length7,172,933
Total ungapped length7,171,718
Gaps between scaffolds0
Number of scaffolds71
Scaffold N50263,208
Scaffold L508
Number of contigs76
Contig N50263,208
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)71

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,172,933717,171,718263,20850

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nocardiopsis flavescensNocardiopsis flavescens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_018316655.1Nocardiopsis changdeensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.8069.4567.34

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected