U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1340882v1

Organism name:
Mucilaginibacter sp. E4BP6 (CFB group bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: E4BP6
BioSample:
SAMN14515634
BioProject:
PRJNA617191
Submitter:
DOE Joint Genome Institute
Date:
2020/07/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_013408825.1 (latest)
RefSeq assembly accession:
GCF_013408825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACCBZ01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
no
Genome coverage:
310.0x
Sequencing technology:
Illumina

IDs: 7342991 [UID] 20325178 [GenBank] 20364208 [RefSeq]

See Genome Information for Mucilaginibacter sp. E4BP6

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length4,834,404
Total ungapped length4,834,308
Gaps between scaffolds0
Number of scaffolds24
Scaffold N50596,039
Scaffold L504
Number of contigs25
Contig N50469,902
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)24

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,834,404244,834,308596,03910

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mucilaginibacter sp. E4BP6Mucilaginibacter sp. E4BP6

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900105165.1Mucilaginibacter mallensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.6410.428.36

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena