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IMG-taxon 2617270910 annotated assembly

Organism name:
Salibacterium qingdaonense (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 1.6134
BioSample:
SAMN04488054
BioProject:
PRJEB17474
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900114715.1 (latest)
RefSeq assembly accession:
GCF_900114715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOTY01
Genome coverage:
364x

IDs: 882261 [UID] 3704268 [GenBank] 4876428 [RefSeq]

See Genome Information for Salibacterium qingdaonense

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length3,516,738
Total ungapped length3,516,113
Gaps between scaffolds0
Number of scaffolds68
Scaffold N5097,359
Scaffold L509
Number of contigs70
Contig N5093,448
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)68

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,516,738683,516,11397,35920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salibacterium qingdaonenseSalibacterium qingdaonense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900115625.1Salibacterium halotoleranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.3271.5569.62

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected