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IMG-taxon 2585427601 annotated assembly

Organism name:
Thalassobacter stenotrophicus DSM 16310 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 16310
BioSample:
SAMN02744035
BioProject:
PRJEB18303
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/12/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900141945.1 (latest)
RefSeq assembly accession:
GCF_900141945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FQYZ01
Genome coverage:
431x

IDs: 909701 [UID] 3777028 [GenBank] 3839588 [RefSeq]

See Genome Information for Thalassobacter stenotrophicus

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,598,816
Total ungapped length3,597,846
Gaps between scaffolds0
Number of scaffolds39
Scaffold N50255,911
Scaffold L504
Number of contigs43
Contig N50222,035
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)39

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,598,816393,597,846255,91140

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thalassobacter stenotrophicus DSM 16310Thalassobacter stenotrophicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001458315.1Thalassobacter stenotrophicustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001458315.1Thalassobacter stenotrophicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.2399.39
Best-match type99.9999.2399.39

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna