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ASM1686461v1

Organism name:
Bacteroides fragilis (CFB group bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: DK1985
BioSample:
SAMN12869706
BioProject:
PRJNA574815
Submitter:
Odense University Hospital
Date:
2021/02/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_016864615.1 (latest)
RefSeq assembly accession:
GCF_016864615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.7
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Oxford Nanopore MiniION; Illumina MiSeq

IDs: 9276371 [UID] 24970228 [GenBank] 24991288 [RefSeq]

See Genome Information for Bacteroides fragilis

There are 1283 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Ulrik S. Justesen
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/24/2023 02:44:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,487
CDSs (total)::4,393
Genes (coding)::4,320
CDSs (with protein)::4,320
Genes (RNA)::94
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::74
ncRNAs::2
Pseudo Genes (total)::73
CDSs (without protein)::73
Pseudo Genes (ambiguous residues)::0 of 73
Pseudo Genes (frameshifted)::28 of 73
Pseudo Genes (incomplete)::40 of 73
Pseudo Genes (internal stop)::22 of 73
Pseudo Genes (multiple problems)::13 of 73
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,380,874
Total ungapped length5,380,874
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016864625.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP044428.1=NZ_CP044428.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,380,874

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides fragilisBacteroides fragilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020097275.1Bacteroides fragilistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014288095.1Bacteroides hoministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.3371.4473.42
Best-match type98.7478.3882.71

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%