U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM973950v2

Organism name:
Apolygus lucorum (bugs)
Isolate:
12Hb
BioSample:
SAMN11095929
BioProject:
PRJNA526332
Submitter:
Agricultural Genomics Institute at Shenzhen
Date:
2020/09/02
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_009739505.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
WIXP02
Assembly method:
Canu v. 1.6
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio Sequel

IDs: 7990051 [UID] 21899708 [GenBank]

See Genome Information for Apolygus lucorum

History (Show revision history)

Comment

Global statistics

Total sequence length1,023,618,409
Total ungapped length1,023,254,121
Gaps between scaffolds0
Number of scaffolds191
Scaffold N5068,132,828
Scaffold L507
Number of contigs3,887
Contig N50783,891
Contig L50304
Total number of chromosomes and plasmids17
Number of component sequences (WGS or clone)191

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_009739815.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1CM019167.2n/an/a0
Linkage Group LG2CM019176.2n/an/a0
Linkage Group LG3CM019177.2n/an/a0
Linkage Group LG4CM019178.2n/an/a0
Linkage Group LG5CM019179.2n/an/a0
Linkage Group LG6CM019180.2n/an/a0
Linkage Group LG7CM019181.2n/an/a0
Linkage Group LG8CM019182.2n/an/a0
Linkage Group LG9CM019183.2n/an/a0
Linkage Group LG10CM019168.2n/an/a0
Linkage Group LG11CM019169.2n/an/a0
Linkage Group LG12CM019170.2n/an/a0
Linkage Group LG13CM019171.2n/an/a0
Linkage Group LG14CM019172.2n/an/a0
Linkage Group LG15CM019173.2n/an/a0
Linkage Group LG16CM019174.2n/an/a0
Linkage Group LG17CM019175.2n/an/a0
unplacedn/an/an/a174

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,023,618,4091911,023,254,12168,132,8283,6960
Linkage Group LG1117,000,8191116,975,258117,000,8192610
Linkage Group LG280,528,871180,503,71880,528,8712600
Linkage Group LG371,560,797171,540,25171,560,7972070
Linkage Group LG469,083,832169,052,88669,083,8323110
Linkage Group LG568,617,156168,599,81868,617,1561780
Linkage Group LG668,388,307168,350,35468,388,3073880
Linkage Group LG768,132,828168,112,10568,132,8282080
Linkage Group LG866,611,108166,560,29366,611,1085120
Linkage Group LG966,203,219166,192,27366,203,2191110
Linkage Group LG1056,526,986156,514,14056,526,9861300
Linkage Group LG1150,198,741150,190,87250,198,741810
Linkage Group LG1249,688,247149,657,53249,688,2473110
Linkage Group LG1349,338,082149,310,98249,338,0822710
Linkage Group LG1441,843,727141,834,48041,843,727940
Linkage Group LG1541,546,263141,534,16341,546,2631210
Linkage Group LG1634,546,372134,535,04934,546,3721140
Linkage Group LG1716,429,041116,415,98016,429,0411360
unplaced7,374,0131747,373,96754,54620