CanFam2.0

This assembly has been replaced. See current version

Organism name:: Canis lupus familiaris (dog)
Infraspecific name:: Breed: boxer
BioProject:: PRJNA13179
Submitter:: Dog Genome Sequencing Consortium
Date:: 2005/07/12
Synonyms:: canFam2
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000002285.1 (replaced)
RefSeq assembly accession:: GCF_000002285.1 (replaced)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: AAEX02

IDs: 2718 [UID] 296118 [GenBank] 2718 [RefSeq]

See Genome Information for Canis lupus

Pathogen Detection Resources

There are 27 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000002285.4	≠	GCF_000002285.5	Dog10K_Boxer_Tasha	Chromosome	Latest GenBank, Latest RefSeq
GCA_000002285.3	n/a	n/a	canfam4	Chromosome	GenBank suppressed
GCA_000002285.2	≠	GCF_000002285.3	CanFam3.1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000002285.1	≠	GCF_000002285.2	CanFam2.0	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000002285.1	=	GCF_000002285.1	CanFam2.0	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	2,528,430,226
Total ungapped length	2,384,979,816
Gaps between scaffolds	86
Number of scaffolds	3,314
Scaffold N50	45,337,677
Scaffold L50	21
Number of contigs	35,695
Contig N50	179,651
Contig L50	3,739
Total number of chromosomes and plasmids	39
Number of component sequences (WGS or clone)	35,696

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000001.2	=	NC_006583.2	0
Chromosome 2	CM000002.2	=	NC_006584.2	0
Chromosome 3	CM000003.2	=	NC_006585.2	0
Chromosome 4	CM000004.2	=	NC_006586.2	0
Chromosome 5	CM000005.2	=	NC_006587.2	0
Chromosome 6	CM000006.2	=	NC_006588.2	0
Chromosome 7	CM000007.2	=	NC_006589.2	0
Chromosome 8	CM000008.2	=	NC_006590.2	0
Chromosome 9	CM000009.2	=	NC_006591.2	0
Chromosome 10	CM000010.2	=	NC_006592.2	0
Chromosome 11	CM000011.2	=	NC_006593.2	0
Chromosome 12	CM000012.2	=	NC_006594.2	0
Chromosome 13	CM000013.2	=	NC_006595.2	0
Chromosome 14	CM000014.2	=	NC_006596.2	0
Chromosome 15	CM000015.2	=	NC_006597.2	0
Chromosome 16	CM000016.2	=	NC_006598.2	0
Chromosome 17	CM000017.2	=	NC_006599.2	0
Chromosome 18	CM000018.2	=	NC_006600.2	0
Chromosome 19	CM000019.2	=	NC_006601.2	0
Chromosome 20	CM000020.2	=	NC_006602.2	0
Chromosome 21	CM000021.2	=	NC_006603.2	0
Chromosome 22	CM000022.2	=	NC_006604.2	0
Chromosome 23	CM000023.2	=	NC_006605.2	0
Chromosome 24	CM000024.2	=	NC_006606.2	0
Chromosome 25	CM000025.2	=	NC_006607.2	0
Chromosome 26	CM000026.2	=	NC_006608.2	0
Chromosome 27	CM000027.2	=	NC_006609.2	0
Chromosome 28	CM000028.2	=	NC_006610.2	0
Chromosome 29	CM000029.2	=	NC_006611.2	0
Chromosome 30	CM000030.2	=	NC_006612.2	0
Chromosome 31	CM000031.2	=	NC_006613.2	0
Chromosome 32	CM000032.2	=	NC_006614.2	0
Chromosome 33	CM000033.2	=	NC_006615.2	0
Chromosome 34	CM000034.2	=	NC_006616.2	0
Chromosome 35	CM000035.2	=	NC_006617.2	0
Chromosome 36	CM000036.2	=	NC_006618.2	0
Chromosome 37	CM000037.2	=	NC_006619.2	0
Chromosome 38	CM000038.2	=	NC_006620.2	0
Chromosome X	CM000039.2	=	NC_006621.2	0
unplaced	n/a	n/a	n/a	3,227

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	2,528,430,226	3,314	2,384,979,816	45,337,677	32,381	86
Chromosome 1	125,616,256	2	121,613,690	69,610,260	1,631	2
Chromosome 2	88,410,189	5	84,341,055	45,337,677	1,178	5
Chromosome 3	94,715,083	4	91,198,788	54,637,777	983	4
Chromosome 4	91,483,860	2	88,143,212	77,990,652	871	2
Chromosome 5	91,976,430	5	88,462,822	26,073,285	1,220	5
Chromosome 6	80,642,250	5	76,905,424	59,897,527	1,080	5
Chromosome 7	83,999,179	4	80,302,542	61,970,377	869	4
Chromosome 8	77,315,194	3	73,880,516	70,772,986	855	3
Chromosome 9	64,418,924	5	60,589,577	13,317,768	1,050	5
Chromosome 10	72,488,556	2	68,876,272	52,942,087	983	2
Chromosome 11	77,416,458	2	73,826,583	65,355,756	810	2
Chromosome 12	75,515,492	1	72,220,817	72,515,492	719	1
Chromosome 13	66,182,471	3	62,639,220	22,442,316	729	3
Chromosome 14	63,938,239	1	60,581,981	60,938,239	551	1
Chromosome 15	67,211,953	1	63,711,742	64,211,953	901	1
Chromosome 16	62,570,175	3	58,757,865	20,516,026	657	3
Chromosome 17	67,347,617	2	64,001,406	51,591,990	763	2
Chromosome 18	58,872,314	2	55,222,595	30,550,832	824	2
Chromosome 19	56,771,304	2	53,538,183	36,014,024	463	2
Chromosome 20	61,280,721	2	57,664,768	33,097,591	996	2
Chromosome 21	54,024,781	1	50,706,297	51,024,781	555	1
Chromosome 22	64,401,119	2	61,179,209	55,611,003	566	2
Chromosome 23	55,389,570	1	52,059,433	52,389,570	471	1
Chromosome 24	50,763,139	1	47,361,540	47,763,139	626	1
Chromosome 25	54,563,659	4	51,076,379	27,209,170	589	4
Chromosome 26	42,029,645	2	38,671,810	26,181,381	593	2
Chromosome 27	48,908,698	1	45,633,560	45,908,698	577	1
Chromosome 28	44,191,819	3	40,890,116	39,419,963	562	3
Chromosome 29	44,831,629	1	41,631,755	41,831,629	368	1
Chromosome 30	43,206,070	1	39,958,399	40,206,070	484	1
Chromosome 31	42,263,495	2	38,844,176	38,210,901	459	2
Chromosome 32	41,731,424	1	38,651,533	38,731,424	281	1
Chromosome 33	34,424,479	2	31,176,821	19,073,834	375	2
Chromosome 34	45,128,234	2	41,871,978	29,643,547	406	2
Chromosome 35	29,542,582	1	26,365,081	26,542,582	291	1
Chromosome 36	33,840,356	1	30,679,378	30,840,356	342	1
Chromosome 37	33,915,115	1	30,726,058	30,915,115	363	1
Chromosome 38	26,897,727	1	23,666,373	23,897,727	336	1
Chromosome X	126,883,977	3	122,246,324	75,215,785	1,681	2
unplaced	83,320,043	3,227	75,104,538	64,114	4,323	0

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CanFam2.0

See Genome Information for Canis lupus

Pathogen Detection Resources

There are 27 assemblies for this organism

History (Show revision history)

Comment

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