AAFI00000000.2 Dictyostelium discoideum AX4
- Master
# of Contigs: 262 (3 are dead) # of Proteins: 13,292 (29 are dead) # of Scaffolds/Chrs: 42 (3 are dead) Total length: 34,182,734 bp BioProject: PRJNA201 BioSample: SAMN02953606 Keywords: WGS Annotation: Contigs Organism: Dictyostelium discoideum AX4 – show lineagehide lineage Biosource: /mol_type = genomic/strain = AX4WGS: AAFI02000001:AAFI02000262 Scaffolds: CH709147:CH709182, CM000150:CM000155 42 scaffolds, total length is 34,134,454 basesReference: The genome of the social amoeba Dictyostelium discoideum : Nature 435 (7038), 43-57 (2005) – show 98 authorshide authorsThe Dictyostelium discoideum Sequencing Consortium, Eichinger,L., Pachebat,J.A., Glockner,G., Rajandream,M.A., Sucgang,R., Berriman,M., Song,J., Olsen,R., Szafranski,K., Xu,Q., Tunggal,B., Kummerfeld,S., Madera,M., Konfortov,B.A., Rivero,F., Bankier,A.T., Lehmann,R., Hamlin,N., Davies,R., Gaudet,P., Fey,P., Pilcher,K., Chen,G., Saunders,D., Sodergren,E., Davis,P., Kerhornou,A., Nie,X., Hall,N., Anjard,C., Hemphill,L., Bason,N., Farbrother,P., Desany,B., Just,E., Morio,T., Rost,R., Churcher,C., Cooper,J., Haydock,S., van Driessche,N., Cronin,A., Goodhead,I., Muzny,D., Mourier,T., Pain,A., Lu,M., Harper,D., Lindsay,R., Hauser,H., James,K., Quiles,M., Madan Babu,M., Saito,T., Buchrieser,C., Wardroper,A., Felder,M., Thangavelu,M., Johnson,D., Knights,A., Loulseged,H., Mungall,K., Oliver,K., Price,C., Quail,M.A., Urushihara,H., Hernandez,J., Rabbinowitsch,E., Steffen,D., Sanders,M., Ma,J., Kohara,Y., Sharp,S., Simmonds,M., Spiegler,S., Tivey,A., Sugano,S., White,B., Walker,D., Woodward,J., Winckler,T., Tanaka,Y., Shaulsky,G., Schleicher,M., Weinstock,G., Rosenthal,A., Cox,E.C., Chisholm,R.L., Gibbs,R., Loomis,W.F., Platzer,M., Kay,R.R., Williams,J., Dear,P.H., Noegel,A.A., Barrell,B., Kuspa,A.Submission: Submitted (08-OCT-2004) dictyBase, Center for Genetic Medicine, Northwestern University, 303 E Chicago Ave, Chicago, IL 60611, USA – show 79 authorshide authorsEichinger,L., Pachebat,J.A., Gloeckner,G., Rajandream,M.-A., Sucgang,R., Song,J., Cox,E.C., Tunggal,B., Szafranski,K., Konfortov,B.A., Farbrother,P., Bankier,A.T., Lehmann,R., Hamlin,N., Xu,Q., Davies,R., Gaudet,P., Fey,P., Pilcher,K., Chen,G., Saunders,D., Sodergren,E., Davis,P., Nie,X., Kerhornou,A., Hemphill,L., Bason,N., Berriman,M., Desany,B., Churcher,C., Cooper,J., van Driessche,N., Cronin,A., Goodhead,I., Muzny,D., Hall,N., Harper,D., Lindsay,R., Hauser,H., James,K., Quiles,M., Buchrieser,C., Wardroper,A., Thangavelu,M., Johnson,D., Knights,A., Loulseged,H., Mungall,K., Price,C., Ma,J., Quail,M., Hernandez,J., Rabbinowitsch,E., Steffen,D., Sanders,M., Weinstock,G., Sharp,S., Just,E., Shaulsky,G., Simmonds,M., Tivey,A., White,B., Walker,D., Woodward,J., Winckler,T., Schleicher,M., Rosenthal,A., Rivero,F., Chisholm,R.L., Gibbs,R., Loomis,W.F., Platzer,M., Kay,R.R., Williams,J., Dear,P.H., Noegel,A.A., Barrell,B., Kuspa,A., The Dictyostelium discoideum Sequencing ConsortiumSubmission: Submitted (22-JAN-2008) dictyBase, Center for Genetic Medicine, Northwestern University, 303 E Chicago Ave, Chicago, IL 60611, USA – show 79 authorshide authorsEichinger,L., Pachebat,J.A., Gloeckner,G., Rajandream,M.-A., Sucgang,R., Song,J., Cox,E.C., Tunggal,B., Szafranski,K., Konfortov,B.A., Farbrother,P., Bankier,A.T., Lehmann,R., Hamlin,N., Xu,Q., Davies,R., Gaudet,P., Fey,P., Pilcher,K., Chen,G., Saunders,D., Sodergren,E., Davis,P., Nie,X., Kerhornou,A., Hemphill,L., Bason,N., Berriman,M., Desany,B., Churcher,C., Cooper,J., van Driessche,N., Cronin,A., Goodhead,I., Muzny,D., Hall,N., Harper,D., Lindsay,R., Hauser,H., James,K., Quiles,M., Buchrieser,C., Wardroper,A., Thangavelu,M., Johnson,D., Knights,A., Loulseged,H., Mungall,K., Price,C., Ma,J., Quail,M., Hernandez,J., Rabbinowitsch,E., Steffen,D., Sanders,M., Weinstock,G., Sharp,S., Just,E., Shaulsky,G., Simmonds,M., Tivey,A., White,B., Walker,D., Woodward,J., Winckler,T., Schleicher,M., Rosenthal,A., Rivero,F., Chisholm,R.L., Gibbs,R., Loomis,W.F., Platzer,M., Kay,R.R., Williams,J., Dear,P.H., Noegel,A.A., Barrell,B., Kuspa,A., The Dictyostelium discoideum Sequencing ConsortiumSubmission: Submitted (12-AUG-2009) dictyBase, Center for Genetic Medicine, Northwestern University, 303 E Chicago Ave, Chicago, IL 60611, USA – show 79 authorshide authorsEichinger,L., Pachebat,J.A., Gloeckner,G., Rajandream,M.-A., Sucgang,R., Song,J., Cox,E.C., Tunggal,B., Szafranski,K., Konfortov,B.A., Farbrother,P., Bankier,A.T., Lehmann,R., Hamlin,N., Xu,Q., Davies,R., Gaudet,P., Fey,P., Pilcher,K., Chen,G., Saunders,D., Sodergren,E., Davis,P., Nie,X., Kerhornou,A., Hemphill,L., Bason,N., Berriman,M., Desany,B., Churcher,C., Cooper,J., van Driessche,N., Cronin,A., Goodhead,I., Muzny,D., Hall,N., Harper,D., Lindsay,R., Hauser,H., James,K., Quiles,M., Buchrieser,C., Wardroper,A., Thangavelu,M., Johnson,D., Knights,A., Loulseged,H., Mungall,K., Price,C., Ma,J., Quail,M., Hernandez,J., Rabbinowitsch,E., Steffen,D., Sanders,M., Weinstock,G., Sharp,S., Just,E., Shaulsky,G., Simmonds,M., Tivey,A., White,B., Walker,D., Woodward,J., Winckler,T., Schleicher,M., Rosenthal,A., Rivero,F., Chisholm,R.L., Gibbs,R., Loomis,W.F., Platzer,M., Kay,R.R., Williams,J., Dear,P.H., Noegel,A.A., Barrell,B., Kuspa,A., The Dictyostelium discoideum Sequencing ConsortiumOn Aug 18, 2009 this sequence version replaced gi:90971308.
The Dictyostelium discoideum AX4 whole genome shotgun (WGS) project has the project accession AAFI00000000. This version of the project (02) has the accession number AAFI02000000, and consists of sequences AAFI02000001-AAFI02000262.
Each chromosome was individually shotgun cloned and assembled. Since the rDNA genes are present on extrachromosomal elements, they are not included within this project but are present in GenBank Accession Numbers AY171065-AY171067. Similarly, the mitochondrial DNA is not included but is present in GenBank Accession Number AB000109. In August 2009 contig AAFI02000242 was suppressed because it was a contaminant, and contigs AAFI02000226 and AAFI02000244 were made secondary to contigs AAFI02000006 and AAFI02000262, respectively. Assembly Name: dicty_2.7 Genome Coverage: 8.3x Sequencing Technology: Sanger Annotation was updated on the contigs in August 2009.
- Contigs
- Proteins
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Contigs:
GenBank:AAFI02.1.gbff.gz 18.9 MbFASTA:AAFI02.1.fsa_nt.gz 9 MbASN.1:AAFI02.1.bbs.gz 13 MbProteins:
GenPept:AAFI02P.1.gnp.gz 6.6 MbFASTA:AAFI02P.1.fsa_aa.gz 3.9 MbASN.1:AAFI02P.1.bbs.gz 4.4 Mb- History
Minor Version Create Date 1 08/18/2009 7 12/17/2019