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Taxonomy browser (Solanum habrochaites)

Solanum habrochaites

Taxonomy ID: 62890 (for references in articles please use NCBI:txid62890)
current name
Solanum habrochaites S.Knapp & D.M.Spooner, 1999, nom. nov. 1)
basionym:
Lycopersicon hirsutum Dunal, 1816, replaced synonym 2),3)
NCBI BLAST name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Lycopersicon hirsutum f. glabratum C.H.Muell.
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
   Entrez records   
Database name Direct links
Nucleotide 27,440
Protein 1,512
Structure 11
Genome 1
Popset 101
GEO Datasets 35
PubMed Central 494
Gene 128
SRA Experiments 307
Identical Protein Groups 576
BioProject 36
BioSample 343
Assembly 4
Taxonomy 1

Notes:

Comments and References:

Knapp S & Spooner DM 1999
Knapp S and DM Spooner. 1999. A new name for a common Ecuadorian and Peruvian wild tomato species. Novon 9: 375-376.
Peralta, Knapp & Spooner (unpubl.)
Peralta, Knapp & Spooner, unpublished monograph, In: Solanaceae Genome Project Genomics Network, Cornell University - Solanum nomenclature.
Lycopersicon
No valid combination exists in Solanum for this taxon.

Genome Information

Go to NCBI genomic BLAST page for Solanum habrochaites

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
dryaddb supplemental materials Dryad Digital Repository
Lycopersicon hirsutum Humb. & Bonpl. taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Lycopersicon hirsutum Humb. & Bonpl. taxonomy/phylogenetic Integrated Taxonomic Information System
Solanum habrochaites taxonomy/phylogenetic Lifemap
Solanum habrochaites (S.Knapp & D.M.Spooner) herbarium/museum collections PlantaeDB, University of Bucharest
2 records from this provider taxonomy/phylogenetic Plants of the World Online
2 records from this provider taxonomy/phylogenetic The International Plant Names Index
Lycopersicon hirsutum Dunal taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Solanum habrochaites organism-specific WebScipio - eukaryotic gene identification
diArk: Solanum habrochaites organism-specific diArk - a resource for eukaryotic genome research
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
strain
BJ-DC-10 [1] CF4 [1] LA1252 [1] LA1777 [9 8 2603 3]
LS1321 [2 2] LS502 [3 1] NPGS (USDA-ARS) PI134418 [4 4] accession LA1777 [2 1]
variety
LYC4 [1 1]
cultivar
Accession PI126449 [3 20904] Cf4 [1 7] EC-520061 [1 11] EC520061 [3 3]
ECU0524_a [2 2 2] ECU0524_b [2 2 2] ECU0527_a [2 2 2] ECU0527_b [2 2 2]
ECU0531_a [2 2 2] ECU0531_b [2 2 2] ECU0533_a [2 2 2] ECU0533_b [2 2 2]
ECU0537_a [2 2 2] ECU0537_b [2 2 2] ECU0544_a [2 2 2] ECU0544_b [2 2 2]
ECU0652_a [2 2 2] ECU0652_b [2 2 2] ECU1498_a [2 2 2] ECU1498_b [2 2 2]
G1.1560 [1 1] LA 1777 [6 2 2] LA0407 [1 8 1 4 1] LA1033 [1]
LA1223_a [2 2 2] LA1223_b [2 2 2] LA1253 [1 1 1] LA1265 [1 1]
LA1347 [1 1] LA1352 [1 1 1] LA1353 [3 4 1 4] LA1362 [1 1 1]
LA1718 [2 1 2] LA1731 [3 2 3] LA1737 [3 1 3] LA1740 [6 1 5]
LA1753_a [2 2 2] LA1753_b [2 2 2] LA1772 [3 2 3] LA1775(7219) [1 1 1]
LA1777 [20 62 21 40 28] LA1978 [4 2 4] LA2098 [4 2 4] LA2098_a [2 2 2]
LA2098_b [2 2 2] LA2106 [1 1 1] LA2107 [1 1 1] LA2144 [1 1 1]
LA2155 [3 3] LA2156 [5 2 5] LA2158 [13 1 7] LA2167 [1 1 1]
LA2196 [3 2 3] LA2204 [2 1 2] LA2314_a [2 2 2] LA2314_b [2 2 2]
LA2574 [1 1 1] LA2650 [4 2 4] LA2722 [3 2 3] LA2860 [11 1 6]
LA2861 [5 2 5] LA2861_a [2 2 2] LA2861_b [2 2 2] LA2975 [3 1 3]
LA3794 [1 1 1] LA407 [1 4] LA407(c1) [1 1 1] La0386 [4]
PI 134417 [1 1] PI 247087 [1 1] PI126449 [2 2] PI127826 [6 4]
PI129157(c1) [1 1 1] PI134417(c1) [1 1 1] PI134418(c1) [1 1 1] PI251305(c1) [1 1 1]
T039_a [2 2 2] T039_b [2 2 2] ZY59 [1 1]
isolate
10492_1 [1 1 1] 10492_2_2 [1 1 1] 10496_1_2 [1 1 1] 10496_2_2 [1 1 1]
10504_1 [1 1 1] 10509_1 [1 1 1] 10510_3 [1 1 1] 10516_1 [1 1 1]
10516_2 [1 1 1] 19_CNRPROSEQ1 [1] 19_p3CNRBseq [1] 20_CNRPROSEQ1 [1]
361a [8 8 8] 361b [8 8 7] 362a [5 5 5] 362b [5 5 5]
363a [5 5 5] 363b [5 5 4] 364a [7 7 7] 364b [7 7 7]
365a [8 8 8] 365b [8 8 7] 366a [8 8 8] 366b [8 8 7]
367a [7 7 7] 367b [7 7 6] 371a [7 7 7] 371b [7 7 6]
372a [7 7 7] 372b [7 7 7] 373a [8 8 8] 373b [8 8 8]
374a [8 8 8] 374b [8 8 8] 375a [8 8 8] 375b [8 8 7]
376a [8 8 8] 376b [8 8 8] 377a [7 7 7] 377b [7 7 7]
381a [8 8 8] 381b [8 8 7] 382a [7 7 7] 382b [7 7 7]
383a [8 8 7] 383b [8 8 8] 384a [8 8 7] 384b [8 8 8]
385a [8 8 7] 385b [8 8 8] 386a [7 7 6] 386b [7 7 7]
391a [7 7 7] 391b [7 7 7] 392a [8 8 7] 392b [8 8 8]
393a [8 8 8] 393b [8 8 7] 394a [7 7 6] 394b [7 7 7]
395a [8 8 7] 395b [8 8 8] 396a [8 8 8] 396b [8 8 7]
4975 [1] 6_CNRPROSEQ1 [1] 7_CNRPROSEQ1 [1] A [1]
CNR5-CDS_20 [1 1] CNR5-CDS_6 [1 1] CNR5-CDS_7 [1 1] CNR5-CDS_87 [1 1]
CNRGENE_12 [1 1] CNRGENE_35 [1 1] CNRGENE_47 [1 1] CNRGENE_55 [1 1]
CNRGENE_8 [1 1] CNRMET_PRO_14 [1 1] CNRMET_PRO_60 [1 1] CNRMET_PRO_72 [1 1]
CNRMET_PRO_87 [1 1] CPT1-LA1361 [1 1 1] CPT1-LA1391 [1 1 1] CPT1-LA1393 [1 1 1]
CPT1-LA1557A [1 1 1] CPT1-LA1557B [1 1 1] CPT1-LA1557C [1 1 1] CPT1-LA1696 [1 1 1]
CPT1-LA1718 [1 1 1] CPT1-LA1718-B [1 1 1] CPT1-LA1731 [1 1 1] CPT1-LA2098A [1 1 1]
CPT1-LA2098B [1 1 1] CPT1-LA2104 [1 1 1] CPT1-LA2106 [1 1 1] CPT1-LA2109 [1 1 1]
CPT1-LA2155A [1 1 1] CPT1-LA2155B [1 1 1] CPT1-LA2167A [1 1 1] CPT1-LA2167B [1 1 1]
CPT1-LA2196A [1 1 1] CPT1-LA2196B [1 1 1] CPT1-LA2196C [1 1 1] CPT1-LA2409 [1 1 1]
CPT1-LA2650 [1 1 1] CPT1-LA2864 [1 1 1] ECU-1498 [1] G1.1560 [2 2]
JA182 [1 1] LA0094 [1 1] LA0407 [5 3 1 3 15] LA1225 [1 1]
LA1352 [1 1 1] LA1353 [3 3] LA1391 [1 1 1] LA1393 [1 1 1]
LA1557 [1 1 1] LA1625 [2 1 1] LA1696 [3 1 4] LA1718 [1 3 1 3 1]
LA1731 [1 1 1] LA1775 [100 14 112] LA1777 [23 42 42 33] LA1778 [1 7]
LA1779 [3 1 3] LA1918 [2] LA1927 [3 1] LA1928 [1 1]
LA2099 [3 1 3] LA2100 [1 1 1] LA2104 [2 1 3] LA2106 [1 1 1]
LA2107 [1 1 1] LA2155 [1 1 1] LA2167 [2 1 2] LA2196 [1 1 1]
LA2552 [2 1 2] LA2812 [2 1 2] LA2860 [1 1 1] LA2976 [2 1 2]
LA3794 [1 1 1] LA3863 [1 1] LA3864 [1 1] La0386 [1]
Lh1 [2] Lh10 [1] Lh11 [1] Lh12 [1]
Lh13 [1] Lh14 [1] Lh15 [1] Lh16 [1]
Lh17 [1] Lh18 [1] Lh19 [1] Lh2 [1]
Lh20 [1] Lh21 [1] Lh22 [1] Lh3 [1]
Lh4 [1] Lh5 [1] Lh6 [1] Lh7 [1]
Lh8 [1] Lh9 [1] Lhg1 [1] Lhg2 [1]
Lhg3 [1] PI 134418 [2 1] PI 390518 [1] T0039 [2]
TGRC LA2196 [1 1] TS-407 [2 166] ZS13 [1 1] ZS2 [1 1 1]
ZS3 [1 1 1] ZS8 [1 1 1]
specimen-voucher
CNPH420 (CNPH,EMBRAPA Brasil) [1] LA0094 [3 3] LA1223 [2 1] LA1353 [1 1]
LA1691 [1] LA1721 [1 1] LA1753 [1 1] LA1777 [4 1 4]
LA1927 [1 1] LA1928 [1 1] LA2098 [1 1 1] LA2099 [1 1 1]
LA2101 [1 1] LA2101 (TGRC, UCDavis, USA) [3] LA2119 [1 1 1] LA2144 [2 1 2]
LA2175 [1 1 1] LA2175A [1 1 1] LA2722 [1 1] LA2863-402 [1 1 1]
LA2868 [1 1 1] Marshall, J. s. n. LA1353 (Kew Gardens UK) [1] PI 126445 [50 11] PI126449 [2 1]
PTIS:PI LA1353 [20 18 18] TGRC_1353 [1] TGRC_1779 [2] TGRC_1918 [1]
TGRC_2098 [1] TGRC_LA1353 [3 3] TGRC_LA1777 [3 3] TGRC_LA1779 [1 1]
TGRC_LA1918 [3 3] TGRC_LA2098 [3 3] VIR13964 [3 3 3] VIR3969 [1 4 1]
forma
glabratum [11 4]
ecotype
LA2167 [7 1 1 7]
bio-material
TGRC:LA1777 [2 2] USDA:GRIN:PI126445 [3 3] USDA:GRIN:PI126446 [2 2] USDA:GRIN:PI127826 [2 2]
USDA:GRIN:PI128644 [4 4] USDA:GRIN:PI209978 [6 6] USDA:GRIN:PI247087 [4 4] USDA:GRIN:PI251303 [4 4]
USDA:GRIN:PI251304 [2 2] USDA:GRIN:PI308182 [4 4] USDA:GRIN:PI365903 [2 2] USDA:GRIN:PI365904 [4 4]
USDA:GRIN:PI365905 [2 2] USDA:GRIN:PI365906 [2 2] USDA:GRIN:PI365907 [2 2] USDA:GRIN:PI379056 [2 2]
USDA:GRIN:PI390515 [4 4] USDA:GRIN:PI390516 [2 2] USDA:GRIN:PI390517 [2 2] USDA:GRIN:PI390518 [2 2]
USDA:GRIN:PI390658 [2 2] USDA:GRIN:PI390659 [2 2] USDA:GRIN:PI390661 [2 2] USDA:GRIN:PI390662 [2 2]
USDA:GRIN:PI390663 [4 4] WIR 2970 [2 2 2]


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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