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Taxonomy browser (Solanum habrochaites)

Solanum habrochaites

Taxonomy ID: 62890 (for references in articles please use NCBI:txid62890)
current name
Solanum habrochaites C.H.Muell. S.Knapp & D.M.Spooner, 1999, nom. nov. 1)
basionym:
Lycopersicon hirsutum Dunal, 1816, replaced synonym 2),3)
NCBI BLAST name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Lycopersicon hirsutum f. glabratum C.H.Muell.
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
   Entrez records   
Database name Direct links
Nucleotide 27,438
Protein 1,511
Structure 5
Genome 1
Popset 101
GEO Datasets 29
PubMed Central 466
Gene 128
SRA Experiments 271
Identical Protein Groups 575
BioProject 31
BioSample 263
Assembly 4
Taxonomy 1

Notes:

Comments and References:

Lycopersicon
No valid combination exists in Solanum for this taxon.
Peralta, Knapp & Spooner (unpubl.)
Peralta, Knapp & Spooner, unpublished monograph, In: Solanaceae Genome Project Genomics Network, Cornell University - Solanum nomenclature.
Knapp S & Spooner DM 1999
Knapp S and DM Spooner. 1999. A new name for a common Ecuadorian and Peruvian wild tomato species. Novon 9: 375-376.

Genome Information

Go to NCBI genomic BLAST page for Solanum habrochaites

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
dryaddb supplemental materials Dryad Digital Repository
Lycopersicon hirsutum Humb. & Bonpl. taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Lycopersicon hirsutum Humb. & Bonpl. taxonomy/phylogenetic Integrated Taxonomic Information System
Solanum habrochaites taxonomy/phylogenetic Lifemap
2 records from this provider taxonomy/phylogenetic Plants of the World Online
2 records from this provider taxonomy/phylogenetic The International Plant Names Index
Lycopersicon hirsutum Dunal taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Solanum habrochaites organism-specific WebScipio - eukaryotic gene identification
diArk: Solanum habrochaites organism-specific diArk - a resource for eukaryotic genome research
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
strain
BJ-DC-10 [1] CF4 [1] LA1252 [1] LA1777 [9 8 2603 3]
LS1321 [2 2] LS502 [3 1] NPGS (USDA-ARS) PI134418 [4 4] accession LA1777 [2 1]
variety
LYC4 [1 1]
cultivar
Accession PI126449 [3 20904] Cf4 [1 7] EC-520061 [1 11] EC520061 [3 3]
ECU0524_a [2 2 2] ECU0524_b [2 2 2] ECU0527_a [2 2 2] ECU0527_b [2 2 2]
ECU0531_a [2 2 2] ECU0531_b [2 2 2] ECU0533_a [2 2 2] ECU0533_b [2 2 2]
ECU0537_a [2 2 2] ECU0537_b [2 2 2] ECU0544_a [2 2 2] ECU0544_b [2 2 2]
ECU0652_a [2 2 2] ECU0652_b [2 2 2] ECU1498_a [2 2 2] ECU1498_b [2 2 2]
G1.1560 [1 1] LA 1777 [6 2 2] LA0407 [1 8 1 4 1] LA1033 [1]
LA1223_a [2 2 2] LA1223_b [2 2 2] LA1253 [1 1 1] LA1265 [1 1]
LA1347 [1 1] LA1352 [1 1 1] LA1353 [3 4 1 4] LA1362 [1 1 1]
LA1718 [2 1 2] LA1731 [3 2 3] LA1737 [3 1 3] LA1740 [6 1 5]
LA1753_a [2 2 2] LA1753_b [2 2 2] LA1772 [3 2 3] LA1775(7219) [1 1 1]
LA1777 [14 62 21 40 28] LA1978 [4 2 4] LA2098 [4 2 4] LA2098_a [2 2 2]
LA2098_b [2 2 2] LA2106 [1 1 1] LA2107 [1 1 1] LA2144 [1 1 1]
LA2155 [3 3] LA2156 [5 2 5] LA2158 [13 1 7] LA2167 [1 1 1]
LA2196 [3 2 3] LA2204 [2 1 2] LA2314_a [2 2 2] LA2314_b [2 2 2]
LA2574 [1 1 1] LA2650 [4 2 4] LA2722 [3 2 3] LA2860 [11 1 6]
LA2861 [5 2 5] LA2861_a [2 2 2] LA2861_b [2 2 2] LA2975 [3 1 3]
LA3794 [1 1 1] LA407 [1 4] LA407(c1) [1 1 1] La0386 [4]
PI 134417 [1 1] PI 247087 [1 1] PI126449 [2 2] PI127826 [6 4]
PI129157(c1) [1 1 1] PI134417(c1) [1 1 1] PI134418(c1) [1 1 1] PI251305(c1) [1 1 1]
T039_a [2 2 2] T039_b [2 2 2] ZY59 [1 1]
isolate
10492_1 [1 1 1] 10492_2_2 [1 1 1] 10496_1_2 [1 1 1] 10496_2_2 [1 1 1]
10504_1 [1 1 1] 10509_1 [1 1 1] 10510_3 [1 1 1] 10516_1 [1 1 1]
10516_2 [1 1 1] 19_CNRPROSEQ1 [1] 19_p3CNRBseq [1] 20_CNRPROSEQ1 [1]
361a [8 8 8] 361b [8 8 7] 362a [5 5 5] 362b [5 5 5]
363a [5 5 5] 363b [5 5 4] 364a [7 7 7] 364b [7 7 7]
365a [8 8 8] 365b [8 8 7] 366a [8 8 8] 366b [8 8 7]
367a [7 7 7] 367b [7 7 6] 371a [7 7 7] 371b [7 7 6]
372a [7 7 7] 372b [7 7 7] 373a [8 8 8] 373b [8 8 8]
374a [8 8 8] 374b [8 8 8] 375a [8 8 8] 375b [8 8 7]
376a [8 8 8] 376b [8 8 8] 377a [7 7 7] 377b [7 7 7]
381a [8 8 8] 381b [8 8 7] 382a [7 7 7] 382b [7 7 7]
383a [8 8 7] 383b [8 8 8] 384a [8 8 7] 384b [8 8 8]
385a [8 8 7] 385b [8 8 8] 386a [7 7 6] 386b [7 7 7]
391a [7 7 7] 391b [7 7 7] 392a [8 8 7] 392b [8 8 8]
393a [8 8 8] 393b [8 8 7] 394a [7 7 6] 394b [7 7 7]
395a [8 8 7] 395b [8 8 8] 396a [8 8 8] 396b [8 8 7]
4975 [1] 6_CNRPROSEQ1 [1] 7_CNRPROSEQ1 [1] A [1]
CNR5-CDS_20 [1 1] CNR5-CDS_6 [1 1] CNR5-CDS_7 [1 1] CNR5-CDS_87 [1 1]
CNRGENE_12 [1 1] CNRGENE_35 [1 1] CNRGENE_47 [1 1] CNRGENE_55 [1 1]
CNRGENE_8 [1 1] CNRMET_PRO_14 [1 1] CNRMET_PRO_60 [1 1] CNRMET_PRO_72 [1 1]
CNRMET_PRO_87 [1 1] CPT1-LA1361 [1 1 1] CPT1-LA1391 [1 1 1] CPT1-LA1393 [1 1 1]
CPT1-LA1557A [1 1 1] CPT1-LA1557B [1 1 1] CPT1-LA1557C [1 1 1] CPT1-LA1696 [1 1 1]
CPT1-LA1718 [1 1 1] CPT1-LA1718-B [1 1 1] CPT1-LA1731 [1 1 1] CPT1-LA2098A [1 1 1]
CPT1-LA2098B [1 1 1] CPT1-LA2104 [1 1 1] CPT1-LA2106 [1 1 1] CPT1-LA2109 [1 1 1]
CPT1-LA2155A [1 1 1] CPT1-LA2155B [1 1 1] CPT1-LA2167A [1 1 1] CPT1-LA2167B [1 1 1]
CPT1-LA2196A [1 1 1] CPT1-LA2196B [1 1 1] CPT1-LA2196C [1 1 1] CPT1-LA2409 [1 1 1]
CPT1-LA2650 [1 1 1] CPT1-LA2864 [1 1 1] ECU-1498 [1] G1.1560 [2 2]
JA182 [1 1] LA0094 [1 1] LA0407 [5 3 1 3 15] LA1225 [1 1]
LA1352 [1 1 1] LA1353 [3 3] LA1391 [1 1 1] LA1393 [1 1 1]
LA1557 [1 1 1] LA1625 [2 1 1] LA1696 [3 1 4] LA1718 [1 3 1 3 1]
LA1731 [1 1 1] LA1775 [100 14 112] LA1777 [23 42 42 33] LA1778 [1 7]
LA1779 [3 1 3] LA1918 [2] LA1927 [3 1] LA1928 [1 1]
LA2099 [3 1 3] LA2100 [1 1 1] LA2104 [2 1 3] LA2106 [1 1 1]
LA2107 [1 1 1] LA2155 [1 1 1] LA2167 [2 1 2] LA2196 [1 1 1]
LA2552 [2 1 2] LA2812 [2 1 2] LA2860 [1 1 1] LA2976 [2 1 2]
LA3794 [1 1 1] LA3863 [1 1] LA3864 [1 1] La0386 [1]
Lh1 [2] Lh10 [1] Lh11 [1] Lh12 [1]
Lh13 [1] Lh14 [1] Lh15 [1] Lh16 [1]
Lh17 [1] Lh18 [1] Lh19 [1] Lh2 [1]
Lh20 [1] Lh21 [1] Lh22 [1] Lh3 [1]
Lh4 [1] Lh5 [1] Lh6 [1] Lh7 [1]
Lh8 [1] Lh9 [1] Lhg1 [1] Lhg2 [1]
Lhg3 [1] PI 134418 [2 1] PI 390518 [1] T0039 [2]
TGRC LA2196 [1 1] TS-407 [2 166] ZS13 [1 1] ZS2 [1 1 1]
ZS3 [1 1 1] ZS8 [1 1 1]
specimen-voucher
CNPH420 (CNPH,EMBRAPA Brasil) [1] LA0094 [3 3] LA1223 [2 1] LA1353 [1 1]
LA1691 [1] LA1721 [1 1] LA1753 [1 1] LA1777 [4 1 4]
LA1927 [1 1] LA1928 [1 1] LA2098 [1 1 1] LA2099 [1 1 1]
LA2101 [1 1] LA2101 (TGRC, UCDavis, USA) [3] LA2119 [1 1 1] LA2144 [2 1 2]
LA2175 [1 1 1] LA2175A [1 1 1] LA2722 [1 1] LA2863-402 [1 1 1]
LA2868 [1 1 1] Marshall, J. s. n. LA1353 (Kew Gardens UK) [1] PI 126445 [50 11] PI126449 [2 1]
PTIS:PI LA1353 [20 18 18] TGRC_1353 [1] TGRC_1779 [2] TGRC_1918 [1]
TGRC_2098 [1] TGRC_LA1353 [3 3] TGRC_LA1777 [3 3] TGRC_LA1779 [1 1]
TGRC_LA1918 [3 3] TGRC_LA2098 [3 3] VIR13964 [3 3 3] VIR3969 [1 4 1]
forma
glabratum [11 4]
ecotype
LA2167 [1 1]
bio-material
TGRC:LA1777 [2 2] USDA:GRIN:PI126445 [3 3] USDA:GRIN:PI126446 [2 2] USDA:GRIN:PI127826 [2 2]
USDA:GRIN:PI128644 [4 4] USDA:GRIN:PI209978 [6 6] USDA:GRIN:PI247087 [4 4] USDA:GRIN:PI251303 [4 4]
USDA:GRIN:PI251304 [2 2] USDA:GRIN:PI308182 [4 4] USDA:GRIN:PI365903 [2 2] USDA:GRIN:PI365904 [4 4]
USDA:GRIN:PI365905 [2 2] USDA:GRIN:PI365906 [2 2] USDA:GRIN:PI365907 [2 2] USDA:GRIN:PI379056 [2 2]
USDA:GRIN:PI390515 [4 4] USDA:GRIN:PI390516 [2 2] USDA:GRIN:PI390517 [2 2] USDA:GRIN:PI390518 [2 2]
USDA:GRIN:PI390658 [2 2] USDA:GRIN:PI390659 [2 2] USDA:GRIN:PI390661 [2 2] USDA:GRIN:PI390662 [2 2]
USDA:GRIN:PI390663 [4 4] WIR 2970 [2 2 2]


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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