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Taxonomy browser (Coffea canephora)

Coffea canephora

Taxonomy ID: 49390 (for references in articles please use NCBI:txid49390)
current name
Coffea canephora Pierre ex A.Froehner, 1897
NCBI BLAST name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Coffea canephora var. robusta (L.Linden) A.Chev.
heterotypic synonym
Coffea robusta L.Linden
common name(s) robusta coffee
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
   Entrez records   
Database name Subtree links Direct links
Nucleotide 226,598 226,563
Protein 27,059 27,059
Structure 6 6
Genome 1 1
Popset 50 50
GEO Datasets 17 17
PubMed Central 1,225 1,225
Gene 133 133
SRA Experiments 929 929
Identical Protein Groups 26,100 26,100
BioProject 35 35
BioSample 693 693
Assembly 2 2
Taxonomy 2 1

Comments and References:

image:Coffea canephora
GRIN taxonomy
Name verified on date of entry into database in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.
TROPICOS (Mar 20, 2012)
Name verified on 20 Mar 2012 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/
World Checklist of Rubiaceae (Mar 13, 2017)
Name accessed on 13 March 2017 in: Govaerts, R., Ruhsam, M., Andersson, L., Robbrecht, E., Bridson, D., Davis, A., Schanzer, I. & Sonke, B. World Checklist of Rubiaceae. The Board of Trustees of the Royal Botanic Gardens, Kew. Published on the Internet; http://www.kew.org/wcsp/rubiaceae/

Genome Information

Go to NCBI genomic BLAST page for Coffea canephora
Genome view: 11 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Coffea canephora Pierre ex A. Froehner taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Coffea canephora Pierre ex Froehner taxonomy/phylogenetic Integrated Taxonomic Information System
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Coffea canephora taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Coffea canephora (Pierre ex A.Froehner) herbarium/museum collections PlantaeDB, University of Bucharest
2 records from this provider taxonomy/phylogenetic Plants of the World Online
2 records from this provider taxonomy/phylogenetic The International Plant Names Index
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Coffea canephora organism-specific WebScipio - eukaryotic gene identification
diArk: Coffea canephora organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
strain
Conillon cultivar Conilon [1 7 3 2 36] DH200=94 [1 1 13675 25574] IF444 [1]
variety
Conilon cultivar Conilon [1 7 3 2 36] robusta cultivar Robusta [12 97 10 12]
cultivar
126 [265] 97 [1 1] BB62 [1 1 1] BP409 [12 11 12]
BR9 [1 1] C x R [1 1] C1007 [4 2 2] C2011 [4 2 2]
C3001 [4 2 2] C4001 [2 1 2] CPAC [2 2 2] Conilon [1 7 3 2 36]
CxR [328 1 273] DH200-94 [1 21 2 9] G2020 [4 2 2] HD200-94 [2 141888]
IF 181 [3 3] IF181 [4 4] Jolly Quartz I [2 2] Jolly Quartz II [2 2]
Moka Fine C [2 2] Robusta [12 97 10 12] S-274 [14 3 11] S.274 [14 3 11]
S334 [40] Sln-274 [40] UW002 [4 2 2] UW099 [4 2 2]
Vietnam clean [2 2] Vietnam unwashed [2 2] robusta S-274 [18 18]
group
Congolese [3 3 1]
isolate
1-sn [1 1] AD7LI35 [3 3] C013 [7 4] C1 [2 1 2]
C1-1 [1 1] C10 [1 1 1] C2-9 [1 1] C3-9 [1 1]
C4-3 [1 1] C4-4 [1 1] C5-9 [1 1] C512-2 [1 1 1]
C6 [1 1 1] C6-6 [1 1] C7 [2 1 2] C7-2 [1 1]
C8 [1 1 1] C8-1 [1 1] C9 [1 1 1] CBC1092 [1 1]
CBC1093 [1 1] CBC1094 [1] CBC1096 [1 1] Ccan02_S3 [1 1 1]
Ccan118_S40 [1 1 1] Ccan118_S41 [1 1 1] Ccan119_S42 [1 1 1] Ccan119_S43 [1 1 1]
Ganesh-02 [1 1 1] Ganesh-A [1 1 1] HD-200-94 [3] IF200 [1]
R1 [2 2] R3 [2 2] S7 [2 1] S8 [2 1]
WRI1 [2 2] WRV1 [2 2]
specimen-voucher
014862 [1] 014863 [1] 014864 [1] 014865 [1]
014866 [1] 014867 [1] 014868 [1] 014869 [1]
014870 [1] 14862 [1 1 1] 14863 [1 1 1] 14864 [1 1 1]
14865 [1 1 1] 14866 [1 1 1] 14867 [1 1 1] 14868 [1 1 1]
14869 [1 1 1] 14870 [1 1 1] 24-1 [18 5 18] 24-1M [18 5 18]
24-1a [18 5 18] 26-cc4 [18 5 18] 26-cc8 [18 5 18] 26-cc9 [18 5 18]
Bg-10 [18 5 18] Bg-M2 [18 5 18] CBC1101 [1 1] CBC1128 [1 1]
CBC747 [1 1] CBC751 [1 1] CC-14 [18 5 18] CC-18 [18 5 18]
CC-6 [18 5 18] CMPH-1-sn [1 1] LG3-1 [18 5 18] Lg-01 [18 5 18]
Lg-8 [18 5 18] Lg-M [18 5 18] MKU 7072 [1 1 1] MN169can [3 3 4]
Maurin 21 (K) [4 2] S-274 [1 1] SL1Ken [4 3 2] SL1a [4 3 2]
SL2Ken [4 3 2] Sg-1 [18 5 18] Sg-5 [36 5 36] US:VanNeste810 [3 3]
Xwang-4 [18 5 18] Xwang-8 [18 5 18] Xwang-M [18 5 18] cc-1 [18 5 18]
cc-4 [18 5 18] personal collection:D. Ganesh:MKU 7081 [1 1 1]


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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