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Taxonomy browser (Agrobacterium vitis)

Agrobacterium vitis

Taxonomy ID: 373 (for references in articles please use NCBI:txid373)
current name
Agrobacterium vitis Ophel and Kerr 1990
type strain of Agrobacterium vitis: ATCC:49767, CIP:105853, HAMBI:1817, ICMP:10752, IFO:15140, JCM:21033, BCCM/LMG:8750, NBRC:15140, NCPPB:3554, personal::K309, IAM:14140, CGNCC:1.7033
homotypic synonym:
Rhizobium vitis (Ophel and Kerr 1990) Young et al. 2001
Allorhizobium vitis (Ophel and Kerr 1990) Mousavi et al. 2016
homotypic synonym:
Allorhizobium vitis (Ophel and Kerr 1990) Mousavi et al. 2016 emend. Kuzmanović et al. 2022, emended name in [List of Changes in Taxonomic Opinion No. 37 (2023), Kuzmanović N et al. (2022b)]
includes:
Agrobacterium vitis plasmid pTiAB4
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Agrobacterium biovar 3
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 4,813 4,802 87
Protein 168,112 168,112 -
Structure 2 2 -
Genome 1 1 -
Popset 26 26 -
PubMed Central 338 338 -
Gene 10,590 10,590 -
SRA Experiments 80 80 -
Protein Clusters 3,690 3,690 -
Identical Protein Groups 114,011 114,011 -
BioProject 33 32 -
BioSample 85 85 2
Assembly 80 80 1
Taxonomy 4 1 -

Comments and References:
List of Changes in Taxonomic Opinion No. 37 (2023), PubMed: abstract
Oren, A., and Göker, M. "Notification of changes in taxonomic opinion previously published outside the IJSEM. List of Changes in Taxonomic Opinion no. 37." Int. J. Syst. Evol. Microbiol. 73(1):005696.
Kuzmanović N et al. (2022b), doi: 10.1186/s12864-022-08662-x, PubMed: abstract
Kuzmanović, N., Biondi, E., Overmann, J., Puławska, J., Verbarg, S., Smalla, K., and Lassalle, F. "Genomic analysis provides novel insights into diversification and taxonomy of Allorhizobium vitis (i.e. Agrobacterium vitis)." BMC Genomics (2022) 23(1):462.
Gan HM et al. (2018)
Gan, H.M., Lee, M.V.J., and Savka, M.A. "High-quality draft genome sequence of the type strain of Allorhizobium vitis, the primary causal agent of grapevine crown gall." Microbiol. Resour. Announc. (2018) 7:e01045-18.
Mousavi SA et al. (2015)
Mousavi, S.A., Willems, A., Nesme, X., de Lajudie, P., and Lindstrom, K. "Revised phylogeny of Rhizobiaceae: Proposal of the delineation of Pararhizobium gen. nov., and 13 new species combinations." Syst. Appl. Microbiol. (2015) 38:84-90.
Ophel K & Kerr A (1990)
Ophel, K., and Kerr, A. "Agrobacterium vitis sp. nov. for strains of Agrobacterium biovar 3 from grapevines." Int. J. Syst. Bacteriol. (1990) 40:236-241. [No PubMed record available.]
VALIDATION LIST No. 172 (2016) (Allorhizobium vitis)
Validation List No. 172: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2016) 66:4299-4305.
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]
Young JM et al. (2001)
Young, J.M., Kuykendall, L.D., Martinez -Romero, E., Kerr, A., and Sawada, H. "A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudieet al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis." Int. J. Syst. Evol. Microbiol. (2001) 51:89-103.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Allorhizobium vitis meta-databases BacDive
2 records from this provider organism-specific BioCyc
Rhizobium vitis (Ophel and Kerr 1990) Young et al. 2001 taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Agrobacterium vitis culture/stock collections Global Catalogue of Microorganisms
11 records from provider organism-specific Integrated Microbial Genomes
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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