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Taxonomy browser (Rhizobium rhizogenes)

Rhizobium rhizogenes

Taxonomy ID: 359 (for references in articles please use NCBI:txid359)
current name
Rhizobium rhizogenes (Riker et al. 1930) Young et al. 2001
homotypic synonym:
Agrobacterium rhizogenes (Riker et al. 1930) Conn 1942 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
type strain of Agrobacterium rhizogenes: ATCC:11325, CFBP:5520, CIP:104328, DSM:30148, HAMBI:1816, ICMP:5794, IFO:13257, JCM:20919, BCCM/LMG:150, NBRC:13257, NCPPB:2991
basionym:
"Phytomonas rhizogenes" Riker et al. 1930, effective name in [Riker AJ et al. (1930)]
includes:
Agrobacterium rhizogenes (RI plasmid PRI1724)
Agrobacterium rhizogenes (RI plasmid PRI8196)
Agrobacterium rhizogenes (RI plasmid PRIA4B)
Rhizobium sp. LMG 9509
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Agrobacterium biovar 2
heterotypic synonym
Agrobacterium genomic group 10
heterotypic synonym
Agrobacterium genomic species 10
heterotypic synonym
Agrobacterium genomosp. 10
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 4,422 4,299 303
Protein 214,787 201,128 -
Structure 12 - -
Genome 1 1 -
Popset 59 59 -
PubMed Central 1,467 1,455 -
Gene 59,600 39,093 -
SRA Experiments 112 112 -
Protein Clusters 13 13 -
Identical Protein Groups 147,500 144,735 -
BioProject 28 26 -
BioSample 136 133 2
Assembly 101 99 2
PubChem BioAssay 1 1 -
Taxonomy 3 1 -

Comments and References:
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Riker AJ et al. (1930)
Riker, A.J., Banfield, W.M., Wright, W.H., Keitt, G.W., and Sagen, H.E. "Studies on infectious hairy root of nursery apple trees." J. Agr. Res. (1930) 41:507-540. [No PubMed record available.]
Rhizobium rhizogenes vis-a-vis Agrobacterium rhizogenes
An NCBI in-house ANI analysis of the genomes of two type strains of this species (LMG 150 and NBRC 13257) support its inclusion in the genus Rhizobium rather than the genus Agrobacterium.
image:Agrobacterium rhizogenes
Bergey 8 (Agrobacterium rhizogenes)
Buchanan, R.E., and Gibbons, N.E. (editors): Bergey's Manual of Determinative Bacteriology, 8th edition. The Williams and Wilkins Co., Balitmore, 1974. [Description] [No PubMed record available.]
Conn HJ (1942), other link:http://jb.asm.org/cgi/reprint/44/3/353?view=long&pmid=16560572
Conn, H.J. "Validity of the genus Alcaligenes." J. Bacteriol. (1942) 44:353-360. [No abstract available.]
Mougel C et al. (2002)
Mougel, C., Thioulouse, J., Perriere, G., and Nesme, X. "A mathematical method for determining genome divergence and species delineation using AFLP." Int. J. Syst. Evol. Microbiol. (2002) 52:573-586. [N.B.: source of 'Agrobacterium genomic group' nomenclature]
Sawada H et al. (1993)
Sawada, H., Ieki, H., Oyaizu, H., and Matsumoto, S. "Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium radiobacter and Agrobacterium rhizogenes." Int. J. Syst. Bacteriol. (1993) 43:694-702.
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]
Young JM et al. (2001)
Young, J.M., Kuykendall, L.D., Martinez -Romero, E., Kerr, A., and Sawada, H. "A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudieet al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis." Int. J. Syst. Evol. Microbiol. (2001) 51:89-103.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Rhizobium rhizogenes meta-databases BacDive
6 records from this provider organism-specific BioCyc
Rhizobium rhizogenes (Riker et al. 1930) Young et al. 2001 taxonomy/phylogenetic Encyclopedia of life
10 records from this provider organism-specific Genomes On Line Database
Agrobacterium rhizogenes culture/stock collections Global Catalogue of Microorganisms
15 records from this provider organism-specific Integrated Microbial Genomes
Agrobacterium rhizogenes taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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