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Taxonomy browser (Phocaeicola plebeius)

Phocaeicola plebeius

Taxonomy ID: 310297 (for references in articles please use NCBI:txid310297)
current name
Phocaeicola plebeius (Kitahara et al. 2005) García-López et al. 2020 in [Validation List No. 193 (2020)]
homotypic synonym:
"Phocaeicola plebeius" (Kitahara et al. 2005) García-López et al. 2019, effective name 1) in [García-López M et al. (2019)]
basionym:
Bacteroides plebeius Kitahara et al. 2005
type strain of Bacteroides plebeius: DSM:17135, JCM:12973, personal::M12
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 15,201 14,378 73
Protein 151,120 144,517 -
Structure 16 7 -
Genome 2 1 -
Popset 1 1 -
PubMed Central 495 495 -
Gene 10,874 7,133 -
SRA Experiments 62 43 -
Protein Clusters 2,153 2,153 -
Identical Protein Groups 100,905 99,295 -
BioProject 45 43 -
BioSample 839 820 5
Assembly 104 102 1
Taxonomy 3 1 -

Notes:

Comments and References:

Validation List No. 193 (2020)
Validation List No. 193. "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2020) 70(5):2960-2966.
García-López M et al. (2019), doi: 10.3389/fmicb.2019.02083, PubMed: abstract
García-López, M., Meier-Kolthoff, J.P., Tindall, B.J., Gronow, S., Woyke, T., Kyrpides, N.C., Hahnke, R.L., and Göker, M. "Analysis of 1,000 type-strain genomes improves taxonomic classification of Bacteroidetes." Front Microbiol. (2019) 10:2083.
Kitahara M et al. (2005)
Kitahara, M., Sakamoto, M., Ike, M., Sakata, S., and Benno, Y. "Bacteroides plebeius sp. nov. and Bacteroides coprocola sp. nov., isolated from human faeces." Int. J. Syst. Evol. Microbiol. (2005) 55:2143-2147. Published online 17 June 2005. doi:10.1099/ijs.0.63788-0

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Phocaeicola plebeius meta-databases BacDive
Bacteroides plebeius Kitahara et al. 2005 taxonomy/phylogenetic Encyclopedia of life
Bacteroides plebeius culture/stock collections Global Catalogue of Microorganisms
18 records from provider organism-specific Integrated Microbial Genomes
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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