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Taxonomy browser (Phaeodactylum tricornutum)

Phaeodactylum tricornutum

Taxonomy ID: 2850 (for references in articles please use NCBI:txid2850)
current name
Phaeodactylum tricornutum Bohlin, 1897
NCBI BLAST name: diatoms
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Nitzschia closterium f. minutissima
Lineage( full )
cellular organisms; Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
   Entrez records   
Database name Subtree links Direct links
Nucleotide 145,313 134,720
Protein 21,992 1,041
Structure 17 12
Genome 1 1
Popset 32 32
Conserved Domains 1 -
GEO Datasets 692 658
PubMed Central 3,038 3,038
Gene 10,630 231
SRA Experiments 1,627 1,531
Protein Clusters 5,791 130
Identical Protein Groups 10,854 545
BioProject 128 123
BioSample 1,619 1,522
Assembly 3 2
Taxonomy 2 1

Comments and References:

image:Phaeodactylum tricornutum

Genome Information

Go to NCBI genomic BLAST page for Phaeodactylum tricornutum

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Phaeodactylum tricornutum taxonomy/phylogenetic AlgaeBase
2 records from this provider supplemental materials Dryad Digital Repository
Phaeodactylum tricornutum Bohlin taxonomy/phylogenetic Encyclopedia of life
GOLD: 2 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Phaeodactylum tricornutum culture/stock collections Global Catalogue of Microorganisms
Phaeodactylum tricornutum Bohlin, 1897 taxonomy/phylogenetic Ocean Biogeographic Information System
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
Phaeodactylum tricornutum Bohlin, 1897 taxonomy/phylogenetic World Register of Marine Species
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

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strain
1 [2 1 2] Bohlia; CS-29c, CSIRO Culture Collection, Hobart, Australia [1 3] CCAP 1052-1A [1] CCAP 1052/1A [1]
CCAP 1055/1 [1 141 7 10594 1 20824] CCAP 1055/5 [5 5] CCAP 152-1-A [1] CCAP1052/1A [2 1 1 2]
CCAP1052/1B [2 1 1 2] CCAP1052/6 [1 1] CCAP1055/1 [1 43 4 4 41] CCMA106 [1]
CCMP 1327 [2 2] CCMP 2561 [116 119] CCMP 630 [3 3] CCMP1327 [5 3 3]
CCMP2561 [4 266 27 3 3 2 266] CCMP630 [2 2 1] CCMP631 [1 1] CCMP632 [2 38 21 2 1 1 39]
CCMP633 [4 1 3] CS-29, CSIRO collection, Hobart [1 1] CS-29; CSIRO Collection of Living Microalgae Culture [1] FACHB-863 [2 2]
GY-H9 [2 2] ICE-H [1 1 7 170] IOAC680S [1 1] IOAC735S [1 1]
IOAC742S [1 1] KMCC B-128 [2 2] KMMCC B-112 [1] KMMCC B-129 [1]
KMMCC B-131 [1] KMMCC B-160 [1] KMMCC B-165 [1] KMMCC B-173 [1]
KMMCC B-177 [1] KMMCC B-185 [1] KMMCC B-218 [1] KMMCC B-377 [1]
KMMCC B-386 [1] KMMCC B-405 [1] KMMCC B-411 [1] KMMCC B-414 [1]
KMMCC B-518 [1] KMMCC B-523 [1] KMMCC B-7 [1] KMMCC-541 [5 5]
M10 [1] M11 [1] M12 [1] M13 [1]
M14 [1] M15 [1] M17 [1] M7 [1]
M8 [1] M9 [1] MACC-B228 [4 2] MEM105 [1]
ND 52 [1 1] ND 55 [1 1] ND 56 [1 1] ND 58 [1 1]
NEPCC640 [6 1 1 6] NMBguh002 [1] OUCE6 [1] PT030 [1]
PTDY01 [1] Pt1 8.6, CCMP 2561 [3 32623] Pt10; MACC b228 [1] Pt3(CCAP1052/1B) [1 4582]
Pt8, CCMP 2560 [1 12109] RCC 69 [1] RCC2967 [1 1 37] RCC641 [1]
RCC69 [1] ROS_KABB1 [2 2 1] SAG 1090-1a [1 1] SJ [1]
UTEX 640 [1] UTEX 642 [7 7] UTEX 646 [2 18 16 20 33] UTEX2089 [3 3 2]
UTEX640 [3 3 2] UTEX642 [3 3] Utex646 [5 3 4] from the Institute of Oceanology, CAS [1 16]
nk1103 [1 1]
isolate
1 [3 1 3] 1XYZ-1 [1] 842-2 [2 1 1] 842-3 [2 1 1]
842-4 [2 1 1] 842-5 [1] 842-6 [1] 863-1 [3 1 2]
863-2 [2 1 1] 863-3 [3 1 2] 863-4 [3 1 2] 863-5 [3 1 2]
863-6 [2 1 2] 863-7 [1 1 1] 863-9 [1 1 1] ASYA55 [1]
C19 [1 1] CCAP 1055/1 [2 25] CCMP2561 [33 3 3 3 71] DIC-AU [1 1]
ECSApr20 [1 1 1 2] F [1 1] ICE-H [3 2] PtBST1 [1 1]
PtBST2 [1 1] PtBST4 [1 1] PtCCMP632mar2 [1 1] PtUtexmar1 [1 1]
PtUtexmar2 [1 1] PtriI [1 1] Ptri_actin4 [1 1] PtricornutumII [2 2]
PtricornutumIII [2 2] PtricornutumIV [1 1] PtricornutumV [1 1] UTEX 646 [3 3]
XIAO-1 [3 1 2] XIAO-2 [2 1 2] XIAO-3 [3 1 2] XIAO-4 [3 1 2]
XIAO-5 [3 1 2] XIAO-6 [1] XYZ-1 [1 1] XYZ-11 [1 1 1]
XYZ-2 [3 1 2] XYZ-3 [2 1 1] XYZ-4 [2 1 2] XYZ-5 [3 1 2]
XYZ-6 [1] YUAN-1 [3 1 2] YUAN-2 [3 1 2] YUAN-3 [3 1 2]
YUAN-4 [3 1 2] YUAN-5 [3 1 2] YUAN-6 [2 1 2] YUAN-7 [1 1 1]
YUAN-8 [1 1 1] ind-4 [1]
specimen-voucher
10S151 [1 1] AU 6 [1 1] CCMP630 [1] HK011 [3 3 3]
IK_MTA184 [1] SEH053 [2 1] Theriot Lab Voucher HK538 [3 3 2] Theriot Lab Voucher HK539 [3 3 2]
Theriot Lab Voucher HK540 [3 3 2] WDCM NCC45 [1]
culture-collection
ALGOBANK:171 [1 1] CCAP:1052/1A [1] CCAP:1052/1B [1] CCAP:1052/6 [1]
CCAP:1055/2 [1] CCAP:1055/3 [1] CCAP:1055/4 [1] CCAP:1055/5 [1]
CCAP:1055/6 [1] CCAP:1055/7 [1] CCAP:1055/8 [1] CCMP:1327 [2 1 1]
CCMP:630 [1] PCC:670 [1 1 1] RCC:641 [1] RCC:69 [2]
SAG:1090-1a [1 1] UTEX:642 [4 4]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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