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Taxonomy browser (Latilactobacillus sakei)

Latilactobacillus sakei

Taxonomy ID: 1599 (for references in articles please use NCBI:txid1599)
current name
Latilactobacillus sakei (Katagiri et al. 1934) Zheng et al. 2020 in [Zheng J et al. (2020)]
basionym:
Lactobacillus sakei corrig. Katagiri et al. 1934 (Approved Lists 1980) Katagiri et al. 1934
type strain of Lactobacillus sakei corrig. Katagiri et al. 1934 (Approved Lists 1980): ATCC:15521, CCUG:30501, CIP:103139, DSM:20017, IFO:15893, JCM:1157, BCCM/LMG:13558, BCCM/LMG:9468, NBRC:15893, NCTC:13842
homotypic synonym:
Lactobacillus sakei corrig. Katagiri et al. 1934 (Approved Lists 1980) emend. Klein et al. 1996, emended name 1)
Lactobacillus sake (sic) Katagiri et al. 1934 (Approved Lists 1980), orth. var. 2)
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Lactobacillus bavaricus Stetter and Stetter 1980
type strain of Lactobacillus bavaricus: JCM:1129, ATCC:31063, DSM:20269, BCCM/LMG:9844
Lineage( full )
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Latilactobacillus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 8,915 7,590 771
Protein 157,900 134,304 -
Structure 6 5 -
Popset 68 68 -
GEO Datasets 48 48 -
PubMed Central 337 337 -
Gene 10,109 4,267 -
SRA Experiments 98 66 -
Protein Clusters 1,401 1,401 -
Identical Protein Groups 35,709 34,527 -
BioProject 104 85 -
BioSample 365 274 16
Datasets Genome 124 101 -
PubChem BioAssay 3 3 -
Taxonomy 9 1 -

Notes:

Comments and References:

Zheng J et al. (2020), PubMed: abstract
Zheng, J., Wittouck, S., Salvetti, E., Franz, C.M.A.P., Harris, H.M.B., Mattarelli, P., O'Toole, P.W., Pot, B., Vandamme, P., Walter, J., Watanabe, K., Wuyts, S., Felis, G.E., Gänzle, M.G., and Lebeer, S. "A taxonomic note on the genus description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae." Int. J. Syst. Evol. Microbiol. (2020) 70(4):2782-2858.
Berthier F & Ehrlich SD (1999)
Berthier, F., and Ehrlich, S.D. "Genetic diversity within Lactobacillus sakei and Lactobacillus curvatus and design of PCR primers for its detection using randomly amplified polymorphic DNA." Int. J. Syst. Bacteriol. (1999) 49:997-1007.
Falsen E et al. (1999) (reference with type strain information)
Falsen, E., Pascual, C., Sjoden, B., Ohlen, M., and Collins, M.D. "Phenotypic and phylogenetic characterization of a novel Lactobacillus species from human sources: description of Lactobacillus iners sp. nov." Int. J. Syst. Bacteriol. (1999) 49:217-221.
Kagermeier-Callaway AS & Lauer E (1995)
Kagermeier-Callaway, A.S., and Lauer, E. "Lactobacillus sake Katagiri, Kitahara, and Fukami 1934 is the senior synonym for Lactobacillus bavaricus Stetter and Stetter 1980." Int. J. Syst. Bacteriol. (1995) 45:398-399. [No PubMed record available.]
Kilian M (1998)
Kilian, M. "Necessary changes of bacterial names?" ASM News (1998) 64:670. [No PubMed record available.]
Kilian M (2001)
Kilian, M. "Recommended conservation of the names Streptococcus sanguis, Streptococcus rattus, Streptococcus cricetus, and seven other names included in the Approved Lists of Bacterial Names. Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2001) 51:723-724.
Klein G et al. (1996)
Klein, G., Dicks, L.M.T., Pack, A., Hack, B., Zimmermann, K., Dellaglio, F., and Reuter, G. "Emended descriptions of Lactobacillus sake (Katagiri, Kitahara, and Fukami) and Lactobacillus curvatus (Abo-Elnaga and Kandler): numerical classification revealed by protein fingerprinting and identification based on biochemical patterns and DNA-DNA hybridizations." Int. J. Syst. Bacteriol. (1996) 46:367-376. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Stetter H & Stetter KO (1980)
Stetter, H., and Stetter, K.O. "Lactobacillus bavaricus sp. nov., a new species of the subgenus Streptobacterium." Zentralbl. Bakteriol. Parasitenkd. Infektionskr. Hyg. Abt. 1 Orig. Reihe C (1980) 1:70-74. [No PubMed record available.]
Truper HG (2008)
Truper, H.G.. "Against conservation of specific epithets formed wrongly as nominative nouns in apposition." Int. J. Syst. Evol. Microbiol. (2008) 58:1508-1510.
Trüper HG & De'clari L (1997) (reference relating to orthographic revision)
Trüper, H.G., and De'clari, L. "Taxonomic note: Necessary correction of specific epithets formed as substantives (nouns) 'in apposition'." Int. J. Syst. Bacteriol. (1997) 47(3):908-909. [No PubMed record available.]
VALIDATION LIST No. 4 (1980) (Lactobacillus bavaricus)
VALIDATION LIST No. 4. Int. J. Syst. Bacteriol. (1980) 30:601.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Latilactobacillus sakei meta-databases BacDive
2 records from this provider organism-specific BioCyc
Lactobacillus bavaricus Stetter and Stetter 1980 taxonomy/phylogenetic Encyclopedia of life
GOLD: 26 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Lactobacillus sakei culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
37 records from this provider organism-specific Integrated Microbial Genomes
Latilactobacillus sakei (T) | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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