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Taxonomy browser (Aerococcus urinae)

Aerococcus urinae

Taxonomy ID: 1376 (for references in articles please use NCBI:txid1376)
current name
Aerococcus urinae Aguirre and Collins 1992 in [Aguirre M & Collins MD (1992), VALIDATION LIST No. 42 (1992)]
type strain of Aerococcus urinae: ATCC:51268, CCUG:29291, CCUG:29564, CCUG:34223, CCUG:36881, CIP:104688, DSM:7446, IFO:15544, NBRC:15544, NCFB:2893, NCIMB:702893, NCTC:12142
homotypic synonym:
Aerococcus urinae Aguirre and Collins 1992 emend. Tohno et al. 2014, emended name 1) in [Tohno M et al. (2014)]
Aerococcus urinae Aguirre and Collins 1992 emend. Choi et al. 2023, emended name 2) in [Choi BI et al. (2023), NOTIFICATION LIST IJSEM 73(9) (2023)]
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Aerococcaceae; Aerococcus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 6,652 6,598 106
Protein 20,772 20,772 -
Structure 5 5 -
Genome 1 1 -
Popset 4 4 -
PubMed Central 344 344 -
Gene 3,688 3,688 -
SRA Experiments 134 134 -
Protein Clusters 788 788 -
Identical Protein Groups 20,986 20,986 -
BioProject 19 18 -
BioSample 144 143 7
Assembly 93 92 -
Taxonomy 2 1 -

Notes:

Comments and References:

Aguirre M & Collins MD (1992), PubMed: abstract
Aguirre, M., and Collins, M.D. "Phylogenetic analysis of some Aerococcus-like organisms for urinary tract infections: description of Aerococcus urinae sp. nov." J. Gen. Microbiol. (1992) 138(2):401-405.
VALIDATION LIST No. 42 (1992)
VALIDATION LIST No. 42 Int. J. Syst. Bacteriol. (1992) 42(3):511-511.
Tohno M et al. (2014), PubMed: abstract
Tohno, M., Kitahara, M., Matsuyama, S., Kimura, K., Ohkuma, M., and Tajima, K. "Aerococcus vaginalis sp. nov., isolated from the vaginal mucosa of a beef cow, and emended descriptions of Aerococcus suis, Aerococcus viridans, Aerococcus urinaeequi, Aerococcus urinaehominis, Aerococcus urinae, Aerococcus christensenii and Aerococcus sanguinicola." Int. J. Syst. Evol. Microbiol. (2014) 64(4):1229-1236.
Choi BI et al. (2023), PubMed: abstract
Choi, B.I., Ene, A., Du, J., Johnson, G., Putonti, .C, Schouw, C.H., Dargis, R., Senneby, E., Christensen, J.J., and Wolfe, A.J. "Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov." Int. J. Syst. Evol. Microbiol. (2023) 73(9):006066.
NOTIFICATION LIST IJSEM 73(9) (2023), PubMed: abstract
Oren, A., and Göker, M. "Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 73, part 9 of the IJSEM." Int. J. Syst. Evol. Microbiol. (2023) 73(11):006158.
Christensen JJ et al. (1997)
Christensen, J.J., Whitney, A.M., Teixeira, L.M., Steigerwalt, A.G., Facklam, R.R., Korner, B., and Brenner, D.J. "Aerococcus urinae: intraspecies genetic and phenotypic relatedness." Int. J. Syst. Bacteriol. (1997) 47:28-32.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Aerococcus urinae meta-databases BacDive
2 records from this provider organism-specific BioCyc
Aerococcus urinae Aguirre and Collins 1992 taxonomy/phylogenetic Encyclopedia of life
GOLD Multi-Isolate Organism: Go0138042 organism-specific Genomes On Line Database
Aerococcus urinae culture/stock collections Global Catalogue of Microorganisms
27 records from provider organism-specific Integrated Microbial Genomes
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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