Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Agrobacterium fabrum)

Agrobacterium fabrum

Taxonomy ID: 1176649 (for references in articles please use NCBI:txid1176649)
current name
"Agrobacterium fabrum" Lassalle et al. 2011, effective name 1)
type strain of "Agrobacterium fabrum": personal::C58, personal::Dickey C-58, ATCC:33970, CIP:104333, BCCM/LMG:287, NCCB:85029
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Agrobacterium genomic group 8
heterotypic synonym
Agrobacterium genomic species 8
heterotypic synonym
Agrobacterium genomosp. 8
heterotypic synonym
Agrobacterium genomovar 8
heterotypic synonym
Agrobacterium tumefaciens genomovar G8
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 2,501 1,414 978
Protein 161,711 148,248 -
Structure 239 - -
Genome 1 1 -
Popset 23 23 -
GEO Datasets 114 5 -
PubMed Central 246 246 -
Gene 22,249 11,189 -
SRA Experiments 258 94 -
Protein Clusters 83 83 -
Identical Protein Groups 44,284 42,935 -
BioProject 52 31 -
BioSample 293 103 240
Assembly 39 35 -
PubChem BioAssay 1 - -
Taxonomy 3 1 -

Notes:

Comments and References:

Lassalle F et al. (2011)
Lassalle, F., Campillo, T., Vial, L., Baude, J., Costechareyre, D., Chapulliot, D., Shams, M., Abrouk, D., Lavire, C., Oger-Desfeux, C., Hommais, F., Gueguen, L., Daubin, V., Muller, D., and Nesme, X. "Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens." Genome Biol Evol. (2011) 3:762-781.
Mougel C et al. (2002)
Mougel, C., Thioulouse, J., Perriere, G., and Nesme, X. "A mathematical method for determining genome divergence and species delineation using AFLP." Int. J. Syst. Evol. Microbiol. (2002) 52:573-586. [N.B.: source of 'Agrobacterium genomic group' nomenclature]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
11 records from provider organism-specific Integrated Microbial Genomes
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]