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Taxonomy browser (Bacteroidota)

Bacteroidota

Taxonomy ID: 976 (for references in articles please use NCBI:txid976)
current name
Bacteroidota corrig. Krieg et al. 2021 in [Oren A & Garrity GM (2021)]
homotypic synonym:
"Bacteroidetes" Krieg et al. 2012, effective name 1) in [Validation List No. 143 (2012)]
"Bacteroidota" Whitman et al. 2018, effective name 2) in [Whitman WB et al. (2018)]
homotypic synonym:
"Bacteroidaeota" Oren et al. 2015, effective name in [Oren A et al. (2015)]
equivalent:
Bacteroidetes
NCBI BLAST name: CFB group bacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Sphingobacteria" Cavalier-Smith 2002 in [Cavalier-Smith T (2002)]
common name(s) Bacteroides-Cytophaga-Flexibacter group, Cytophaga-Flexibacter-Bacteroides phylum
blast name
CFB group bacteria
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 6,316,699 26
Protein 47,023,249 6,054
Structure 1,941 -
Genome 4,364 -
Popset 4,954 4,227
Conserved Domains 470 242
GEO Datasets 3,165 -
PubMed Central 116,323 50,626
Gene 1,304,941 -
SRA Experiments 27,202 233
GEO Profiles 6,601 -
Protein Clusters 83,908 184
Identical Protein Groups 53,874,802 6,056
BioProject 8,156 32
BioSample 226,339 257
Assembly 103,627 -
PubChem BioAssay 1,540 -
Taxonomy 25,127 1

Notes:

Comments and References:
Oren A & Garrity GM (2021), PubMed: abstract
Oren, A., and Garrity, G.M. "Valid publication of the names of forty-two phyla of prokaryotes." Int. J. Syst. Evol. Microbiol. (2021) 71(10):005056.
Validation List No. 143 (2012)
Validation List No. 143: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2012) 62(1):1-4. [Erratum: Int. J. Syst. Evol. Microbiol. (2012) 62:1016.]
Whitman WB et al. (2018), PubMed: abstract
Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68(3):967-969.
Oren A et al. (2015), PubMed: abstract
Oren, A., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rosselló-Móra, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Whitman, W.B. "Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2015) 65(11):4284-4287.
Cavalier-Smith T (2002), PubMed: abstract
Cavalier-Smith, T. "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification." Int. J. Syst. Evol. Microbiol. (2002) 52(1):7-76.
Gherna R & Woese CR (1992)
Gherna, R., and Woese, C.R. "A partial phylogenetic analysis of the 'flavobacter-bacteroides' phylum: basis for taxonomic restructuring." Syst. Appl. Microbiol. (1992) 15:513-521.
Hahnke RL et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
Krieg NR et al. (2011)
Krieg, N.R., Ludwig, W., Euzeby, J., and Whitman, W.B. "Phlum XIV. Bacteroidetes phyl. nov." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 4 (The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyglomi, Gemmatimonadetes, Lentisphaerae, Verrumicrobia, Chlamydiae, and Planctomycetes) (N.R. Krieg, J.T. Staley, D.R. Brown, B.P. Hedlund, B.J. Paster, N.L. Ward, W. Ludwig, and W.B. Whitman, eds.), Springer-Verlag, New York (2011). p. 25. [No PubMed record available.]
VALIDATION LIST No. 143 (2012), doi:10.1099/ijs.0.039487-0
Validation List No. 143: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2012) 62:1-4. [Erratum: Int. J. Syst. Evol. Microbiol. (2012) 62:1016.]
Woese CR et al. (1985)
Woese, C.R., Stackebrandt, E., Macke, T.J., and Fox, G.E. "A phylogenetic definition of the major eubacterial taxa." Syst. Appl. Microbiol. (1985) 6:143-151.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bacteroidetes taxonomy/phylogenetic Encyclopedia of life
9 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
141 records from this provider organism-specific Integrated Microbial Genomes
Bacteroidetes taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic Ocean Biogeographic Information System
2 records from this provider taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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